Recent Computational Biology
Group Presentations
Indicates poster/presentation received an award
Indicates poster/presentation received an award
2013 - Navaratnarajah C.K., Kumar, S., Generous, A., Apte-Sengupta, S., Negi A., Braun W., Cattaneo R. Characterization of the measles virus attachment protein stalk. American Society for Virology 32nd Annual Meeting, The Pennsylvania State University, University Park, PA 2013. |
||
-
Navaratnarajah CK, Swati Kumar, Alex Generous,
Swapna Apte-Sengupta, Surendra Negi, Werner Braun,
Roberto Cattaneo. The Measles Virus Fusion
Machinery: Role of the Attachment Protein Stalk.
Institute for Molecular Virology Annual Symposium,
University of Minnesota, Minneapolis MN 2013. |
||
-
Navaratnarajah C.K., Negi A., Braun W., Cattaneo
R. The top of the measles virus H-protein stalk
forms a four-helix bundle distinct from that of
the HN-proteins. American Society for Virology
31st Annual Meeting, University of Wisconsin,
Madison, WI 2012. |
||
-
Navaratnarajah CK, Negi S, Braun W and Cattaneo R.
The measles virus H-protein stalk forms a
four-helix bundle distinct from that of the
HN-proteins. Institute for Molecular Virology
Annual Symposium, University of Minnesota,
Minneapolis MN 2012.
|
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2012 - Maleki, S.J., Cheng, H. and Schein,C.H. Cross-Reactivity Among Peanuts and Tree Nuts. Proceedings of the 41st United States - Japan National Resource Panel (p. 1-2), New Orleans, LA (December 8-13). |
||
- Schein,
C.H.
From
Interferons to Allergens: Computational Analysis
for Novel Therapies,
National Institute of General Medical Sciences
Internal Seminar,
National Institutes of Health, Bethesda, MD
(September 24). |
||
- Schein,
C.H.
Targeting
Toxins, the Lethal Drones of Bacteria, Biology
Departmental Seminar,
Texas Women's University, Denton, TX
(September 14). |
||
- Schein,
C.H.
What Makes
You Sneeze? Motifs of Allergenic Proteins,
Collaborative Research
Alliances for the Cure of Lung Diseases, Rice
University, Houston, TX
(June 21). |
||
- Negi, S.S.,
Haddow, A.D.,
Sherman, M.B.,
Weaver, S.C. and Braun, W. Structural
Studies on the Envelope
Proteins E1 and E2 of Everglades Virus, 17th
Annual Sealy Center for
Structural Biology & Molecular Biophysics
Symposium, Hotel Galvez,
Galveston, TX (April 27). |
||
- Lu, W.,
Schein,
C.H. and Braun, W. Physico-Chemical Property
(PCP) Motifs to
Identify Proteins that Could be Cross-Reactive
With Known Peanut
Allergens, 17th Annual Sealy Center for Structural
Biology &
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (April 27). |
||
- Schein,
C.H.,
Teuber, S.S. and Maleki, S.J. Repeated
Sequences in Nut Allergens
Mediate Cross Reactivity Between Tree Nuts and
Peanuts, 17th Annual
Sealy Center for Structural Biology &
Molecular Biophysics
Symposium, Hotel Galvez, Galveston, TX (April 27). |
||
- Dyer, K.,
Chang,
J.T.,
Schmid, M.F., Rixon, F.J., Myers, C.C., Feng,
J., Wong, K., Ambia-Garrido, J., Vainrub, A.,
Chen, C.,
Krause, K., Power, T.D., Chen, D., Ivanciuc, O.,
Negi,
S.S., Chiu, W., Sowers, L.C., Schein, C.H., Braun,
W. and Pettitt,
B.M. Unlocking the Relationships Between
Macromolecular Sequence, Structure and Function to
Understand and Treat
Diseases: Scientific Computing Research
Laboratory, The University Core
Development Committee & Institute for
Translational Research:
Research Resource Day, University of Texas Medical
Branch, Galveston,
TX (March 16). |
||
2011 - Schein, C.H., Langford, T.D., Chen, D. and Oberhauser, A. Controlling the Size of ABeta Aggregates Reduces Toxicity to Cultured Cells, 15th Annual Forum on Aging Poster Session, University of Texas Medical Branch, Galveston, TX (November 17). |
||
- Schein
C.H.
Designing
Novel Inhibitors of Toxins, the Lethal Drones of
Bacteria, Department
of Biochemistry & Molecular Biology Seminar,
University of Texas
Medical Branch, Galveston, TX (November 10). |
||
- Schein
C.H.
Physicochemical Property Consensus Sequences for
Functional Analysis,
Design of Multivalent Vaccines, and Targeted
Antivirals, 8th Annual
Biotechnology and Bioinformatics Symposium
(BIOT-2011), Rice
University, Houston, TX (October 21). |
||
- Negi, S.S.,
Navaratnarajah,
C.K., Apte, S., Cattaneo, R. and Braun, W.
Prediction and
Analysis of Interacting Residues on Measles Virus
Fusion Protein,
Measles Virus Symposium, Mayo Clinic Rochester, MN
(July 15). |
||
- Schein,
C.H.
From Anthrax
to Polio: Computational and Structural Design of
Novel Inhibitors of
Bacterial Toxins and Antivirals, Universiteit
Leiden, Leiden Institute
of Chemistry, BioSyn Lecture, RA Leiden,
Nederlands (June 24). |
||
|
- Schein,
C.H.
Novel
Approach to Designing Flavivirus Vaccines, 2011
UTMB Immunology
Research in Progress, University of Texas Medical
Branch, Galveston,
TX (April 13). |
|
- Lu, W.,
Oberhauser, A.F. and Braun, W. Engineering
Novel Proteins With
Enhanced Mechanical Strength, 16th Annual
Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Bowen, D.,
Lewis,
J., Beasley, D. and Schein, C.H. A
PCP-Consensus
Dengue Envelope Domain III Protein Generates a
Multivalent Antibody
Response, 16th Annual Structural Biology
Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Negi, S.S.,
Sherman, M.B., Weaver, S.C. and Braun, W.
Structural Studies of
Western Equine Encephalitis Virus for Vaccine
Design, 16th Annual
Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Chen, D.,
Oezguen,
N., Acharya,
V., Ali, K., Choudhury, A., Urvil, P., Braun, W.,
Pothoulakis, C., Savidge, T. and Schein,
C.H. Mechanism of
Inositolphosphate-Mediated Allosteric Activation
of the Clostridium
Difficile Toxins, 16th Annual Structural Biology
Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Ivanciuc,
O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M.
and Braun, W.
Prediction of the Peptide Cross-Reactivity With
the Mountain Cedar
Allergen Jun a 1, 16th Annual Structural Biology
Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Power,
T.D.,
Oezguen, N., Negi, S.S. and Braun, W. A
Structural Comparison of
a 3D- Model of the Peanut Allergen Ara h 2 and the
Recently Released
X-ray Crystal Structure, 16th Annual Structural
Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
- Bowen,
D.M.,
Lewis, J.A.,
Beasley, D.W.M. and Schein, C.H.
Immunogenicity of a
PCP-Consensus Dengue Envelope Domain III Protein
Representing All Four
Types, 2011
Annual Institute for Human Infections and
Immunity/McLaughlin
Colloquium, University of Texas Medical Branch,
Galveston, TX
(March 25). |
||
- Lu, W.,
Oberhauser, A.F. and Braun, W. Engineering
Novel Proteins with
Enhanced Mechanical Strength, 55th Biophysical
Society Annual Meeting,
Baltimore, MD (March 6). |
||
- Braun,
W.
Detection and
Prediction of IgE Epitopes in Allergens, G.
Malcolm Trout Visiting
Scholar Program, Michigan State University, East
Lansing, MI
(March 2). |
||
- Negi, S.S.,
Sherman, M.B.,
Weaver, S.C. and Braun, W. Structural
Studies on the Envelope
Proteins E1 and E2 of Western Equine Encephalitis
Virus, Symposium on
Structural Biology and Infectious Disease,
University of Texas Medical
Branch, Galveston, TX (February 11). |
||
2010 - Braun, W. The Structural Biology of Allergens. Oesper Symposium 2010 honoring Kurt Wuethrich (Nobel Prize 2002 in Chemistry), University of Cincinnati, Cincinnati, OH (October 8). |
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- Schein,
C.H.
New
Approaches to Therapies for Protein Aggregation
Diseases.
Mitchell Center for Neurodegenerative Diseases,
2010 Seminar Series,
University of Texas Medical
Branch, Galveston, TX (September 20). |
||
- Han, W.,
Ivanciuc,
O., Oezguen,
N. and Braun,W. Development of an Automated
Process for Homology
Based Prediction of Protein 3D Structure.
2010 Medical Student
Summer Research Program Poster Session, University
of Texas Medical
Branch, Galveston, TX (June 24). |
||
- Schein, C.H.,
Chen, D.,
Martin, Z.S.,
Bruce, N.J., Soto, C. and Bryce, R.A. Novel
inhibitors of Amyloid
Aggregation: Computational and Spectral Analysis
of their Mode of
Activity. 239th American Chemical Society
National Meeting, San
Francisco, CA (March 25). |
||
- Schein, C.H.,
Maleki, S.
and Teuber,
S. Using Physicochemical-Property Similarity
to Define Common
IgE-Epitopes in Peanut and Walnut Allergens.
15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Chen, D., Ma, L.,
Kanalas, J., Gao, J., Sower, L., Walter, M.A,
Peterson, J.W.,
Gilbertson, S.R. and Schein, C.H.
Structure-Based Redesign of An
Adenylyl-Cyclase Toxin Inhibitor. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Negi, S.S.,
Oezguen, N.
and Braun, W. Prediction of Allergen
Cross-Reactivity Using
Structural Bioinformatics Methods. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Esadze, A.,
Ivanciuc, O.
and Braun, W. Comparative Study of IgE
Epitopes and Sequence
Conservation in the Melon Allergen Cuc m 2.
15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Ivanciuc, O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M.
and Braun, W.
Machine Learning for Peptide Cross-Reactivity With
the Mountain Cedar
Allergen Jun a 1. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Oezguen, N.,
Mantha,
A.K., Mitra, S. and Braun, W. Additional
Evidence for the �Moving
Ion� Mechanism in Endonuclease Function of
APE1/Ref-1. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Power, T.D.,
Negi, S.S.,
Ivanciuc, O. and Braun, W. Analysis of
Surface and Interface
Residues Involved in Antibody/Antigen
Complexes. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Lu, W. and Braun,
W. A New Method to Evaluate and Combine 3D
Templates for Homology
Modeling. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
- Schein, C.H.,
Maleki,
S.J. and Teuber, S. Identifying Similar
IgE-epitopes in Peanut
and Walnut Allergens. American Academy of
Allergy, Asthma &
Immunology 2010 Annual Meeting, New Orleans, LA
(February 26 - March 2). |
||
- Schein, C.H.,
Chen, D.,
Martin, Z.S.,
Bruce, N.J., Soto, C. and Bryce, R.A.
Computational Design of
Inhibitors of Amyloid-β Aggregation for
Alzheimer's Treatment. Keystone Symposium on
"Alzheimer's Disease
Beyond Aβ", Copper
Mountain Resort, Copper Mountain, CO (January 13). |
||
- Braun, W.
Allergen
Structures
in a Genomics Age. Keystone Symposium on
"Structural Genomics:
Expanding the Horizons of Structural Biology",
Beaver Run Resort,
Breckenridge, CO (January 10). |
||
2009 - Chen, D., Bruce, N.J., Ghosh Dastidar, S., Bryce, R.A. and Schein, C.H. Molecular Dynamics Studies of Interactions Between Aggregation Inhibitors and β-Amyloid Fibrils. UTMB Sealy Center on Aging in conjunction with Research Services 13th Annual Forum on Aging, University of Texas Medical Branch, Galveston, TX (November 12). |
||
- Power, T.D.,
Negi, S.S.,
Ivanciuc, O.
and Braun, W. Analysis of
Surface and Interface Residues Involved in
Antibody/Antigen
Complexes. Keck Center 19th Annual Research
Conference, MD
Anderson Cancer
Prevention Building, Texas Medical Center,
Houston, TX (October 29-30). |
||
- Chen, D., Bruce,
N.J.,
Ghosh
Dastidar, S., Bryce, R.A. and Schein, C.H.
Molecular Dynamics
Studies of Interactions Between Aggregation
Inhibitors and
β-Amyloid
Fibrils. Keck Center 19th Annual Research
Conference, MD Anderson
Cancer Prevention Building, Texas Medical Center,
Houston, TX (October
29-30). |
||
- Oezguen, N.,
Mantha,
A.K., Mitra, S. and Braun, W. Additional
Evidence for the "Moving
Ion" Mechanism in Endonuclease Function of
APE1/Ref-1. Keck
Center 19th Annual Research Conference, MD
Anderson Cancer
Prevention Building, Texas Medical Center,
Houston, TX (October 29-30). |
||
- Negi, S.S.,
Tiwari, R.,
Midoro-Horiuti, T., Goldblum, R.M. and Braun,
W. EpiSearch: A New
Method for Mapping Conformational Epitopes using
Peptide Mimetics from
Phage Display Libraries. Keck Center 19th
Annual Research
Conference, MD Anderson Cancer
Prevention Building, Texas Medical Center,
Houston, TX (October 29-30). |
||
- Lu, W., Oezguen,
N. and
Braun, W. Homology Modeling by Template
Combination. Keck
Center 19th Annual Research Conference, MD
Anderson Cancer
Prevention Building, Texas Medical Center,
Houston, TX (October 29-30). |
||
- Ivanciuc, O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M.
and Braun, W.
Modeling Peptide Cross-Reactivity with the
Mountain Cedar Pollen Jun a
1. Keck Center 19th Annual Research
Conference, MD Anderson
Cancer
Prevention Building, Texas Medical Center,
Houston, TX (October 29-30). |
||
- Chen, D., Martin,
Z.S.,
Soto, C. and
Schein,
C.H. Computer Aided Inhibitor Design for
β-Amyloid Fibril
Formation. National Postdoctoral
Appreciation Day, University
of Texas Medical Branch, Galveston,
TX (September 24). |
||
- Chen, D., Martin,
Z.S.,
Ghosh
Dastidar, S., Bruce, N., Marks, G.E., Soto, C.,
Bryce, R.A. and Schein,
C.H. Identifying Beta-sheet Breaker
Peptides
and Small Molecules that Reverse the Aggregation
of β-Amyloid.
Third Annual Bazelides Research Symposium,
University of Texas
School of Public Health, Houston,
TX (June 17). |
||
- Schein,
C.H.
Breaking Apart
Amyloid β-fibrils: MD Simulations with Bound
Beta-sheet Breaker
Peptides
and Small Molecules. The Mitchell Center for
Neurodegenerative
Diseases Seminar Series, University of Texas
Medical Branch, Galveston,
TX (May 4). |
||
- Yingling, B.M.,
Prusak,
D.J.,
Danecek, P., Mason, P.W., Wood, T.G. and Schein,
C.H. Expression
of West Nile Non-Structural Protein 2A in E.
coli. North Carolina
Academy of Science 2009 Annual Meeting, Warren
Wilson College,
Asheville, NC (April 4). |
||
- Schein,
C.H.
Defining IgE
Epitopes Involved in Allergen Cross
Reactivity. 2009 UTMB
Immunology Research in Progress Seminar, The
University of Texas
Medical Branch,
Galveston, TX (April 1). |
||
- Lu, W., Danecek,
P.
and Schein, C.H. Modeling and Analysis of
Consensus Envelope
Proteins for Dengue Virus Highlight Subtype
Specific Areas. 14th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Chen, D.,
Oezguen, N.,
Epstein, H.F.
and Braun, W. Refining 3D Protein Models By
Sequence Alignment
and Template Combination. 14th Annual Sealy
Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Negi, S.S.,
Tiwari, R.,
Midoro-Horiuti, T., Goldblum, R.A. and Braun,
W. EpiSearch: a New
Method for Mapping Conformational Epitopes Using
Peptide Mimics From
Phage Display Libraries. 14th Annual Sealy
Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Chattopadhyay,
A.,
Ivanciuc, O.,
Negi, S.S.
and Braun, W. Computational Analysis of
Allergenic Determinants
for the Peanut Allergen Ara h 3. 14th Annual
Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Oezguen, N.,
Petri, U.,
Savidge, T.
and Braun, W. β-Flap Movement of the RTX
Toxin Cystein
Protease Domain. 14th Annual Sealy Center
for Structural Biology
and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Chen, D. and
Schein,
C.H.
Molecular Dynamics Simulations for Reversing the
Aggregation of Amyloid
β-Fibrils. 14th Annual Sealy Center for
Structural Biology and
Molecular Biophysics Symposium, The University of
Texas Medical Branch,
Galveston, TX (March 27). |
||
- Oezguen, N.,
Mantha,
A.K., Izumi, T., Bhakat, K.K., Mitra, S. and
Braun, W. Does the
APE1 Double Mutant E96Q, D210N Bind Mg2+ in the
Active Site. 3rd
US-EU Conference: Repair of Endogenous Genome
Damage, Moody Gardens
Hotel, Galveston, TX (February 21-25). |
||
2008 - Chen, D., Martin, Z.S., Kayed, R., Soto, C. and Schein, C.H. Computational Selection of Inhibitors of Aβ Aggregation. 12th Annual Forum on Aging , The University of Texas Medical Branch, Galveston, TX (November 19). |
||
- Schein,
C.H.
Flavitrack
Analysis of the Structure and Function of West
Nile Non-Structural
Proteins. Biotechnology and Bioinformatics
Symposium (Biot-2008),
The University of Texas at Arlington, Arlington,
TX (October 17). |
||
- Schein,
C.H.
Common Allergenic Epitopes in Nut Proteins
Contribute to Cross
Reactivity. ILSI Health and
Environmental Sciences Institute (HESI) Food
Allergy Workshop, The
Beacon Hotel and Corporate Quarters, Washington,
DC (October 15). |
||
- Chen, D., Martin,
Z.S.,
Kayed, R., Soto, C. and Schein, C.H.
Computational Selection of
Inhibitors of AΒ Agregation. The 18th Keck
Center Annual Research
Conference, UT M.D. Anderson Cancer Prevention
Building, Texas Medical
Center, Houston, TX (October 3). |
||
- Schein,
C.H.
Computational Design of Inhibitors of Bacterial
Toxins. 64th
Southwest Regional American Chemical Society
Meeting, The Peabody
Little Rock Hotel, Little Rock AK (October 1). |
||
- Martin-Jones,
Z.S.,
Chen, D., Gilbertson, S.R., Schein, C.H., Kayed,
R. & Soto,
C. Beta-sheet breaker and small molecule
inhibitors or amyloids
in Alzheimer's disease. American
Neurological Association
(ANA) 133rd Annual Meeting, Salt Lake City, UT
(September 21-24). |
||
- Yingling, B.M.,
Prusak,
D.J.,
Danecek, P., Mason, P.W., Wood, T.G. and Schein,
C.H. Expression
of West Nile Non-Structural Protein 2A in E. coli.
2008 Summer
Undergraduate Research Program Poster Session,
University of Texas Medical Branch, Galveston, TX
(August 8). |
||
- Mantha, A.,
Bhakat,
K.K., Oezguen,
N., Izumi, T., Braun, W. and Mitra, S.
Exploring Potential Link
Between Seven Cys Residues of HAPE1'S Repair and
Redox Functions: a
Multi Functional DNA Repair Enzyme. 13th
Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Danecek, P. and
Schein,
C.H.
Flavitrack, a Database to Determine Functional and
Immunologically
Important Regions of Flavivirus Sequences.
13th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Schein, C.H.,
Ivanciuc,
O., Midoro-Horiuti, T., Xie, L., Hillman, G.R.,
Goldblum, R.M. and
Braun,W. Identification of Jun a 1
Cross-Reactive Peptides Using
Physico-Chemical Indices and Partial Least
Squares. 13th
Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Oezguen, N.,
Mantha,
A.K., Bhakat, K.K., Izumi, T., Mitra, S. and
Braun, W. Influence
of a Distant Ser Residue on the Active Site Over
16 Angstroms: Unusual
Affect of
C99S APE1 on Endonuclease Activity Or Repair
Function. 13th
Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Negi, S., Tiwari,
R.,
Midoro-Horiuti, T., Goldblum, R.M. and Braun,
W. EpiSearch: a New
Method for Mapping Conformational Epitopes Using
Peptide Mimics From
Phage Display Libraries. 13th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Chen, D., Sower,
L.,
Peterson, J.W. and Schein, C.H. Fragment
Based Drug Design for
Cholera Therapy. 13th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Power, T.D.,
Ivanciuc,
O. and Braun, W. Analysis of Surface and
Interface Residues
Involved in Antibody/Antigen Complexes. 13th
Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Ivanciuc, O.,
Power,
T.D., Gendel, S.M., Schein, C.H. and Braun,
W. AllerML: Ontology
and Markup Language for Allergens and for
Structural Biology Studies of
Allergenicity. 13th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Anderson, K.,
Navaratnarajah, C., Cattaneo, R., Braun, W. and
Oezguen, N. MD
Simulations of Measles Virus Hemagglutinin Y228A
and N274A
Mutants. 13th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Ma, L., Xu, M.,
Garcia,
T. and Oberhauser, A.F. The Effects of Pathogenic
Mutations on
Polycystin-1 Domain Nano-Mechanics. 13th
Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 16-17). |
||
- Danecek, P. and
Schein,
C.H.
Flavitrack, a Database to Determine Functional and
Immunologically
Important Regions of Flavivirus Sequences.
Global Health Poster
Symposium, The Global Health Concentration, The
University of Texas,
School of Public Health, Houston, TX (April 9). |
||
2007 - Braun, W. Structural (3-D) Comparisons of Novel Proteins to Known Allergens. Protein Allergenicity Technical Committee New Methods Workshop, ILSI Health and Environmental Sciences Institute (HESI), Hotel Palais de la Mediterranee, Nice, France (October 24). |
||
- Martin-Jones,
Z.S.,
Chen, D.,
Gilbertson, S.R., Schein, C.H. and Soto, C.
Beta-Sheet Breaker
and Small
Molecule Inhibitors of Amyloids in Alzheimer's
Disease. UTMB
Sealy Center on Aging in conjunction with Research
Services 11th Annual
Forum on Aging, University of Texas Medical
Branch, Galveston, TX
(October 3). |
||
- Chen, D.,
Martin-Jones,
Z.S., Soto, C. and Schein, C.H.
Pharmacophore Based Inhibitors of
Beta-amyloid Fibril Formation. UTMB Sealy
Center on Aging in
conjunction with Research Services 11th Annual
Forum on Aging,
University of Texas Medical Branch, Galveston, TX
(October 3). |
||
- Schein, C.H.,
Chen, D.,
Misra, M.,
Sower, L., Peterson, J.W. Computer Aided
Design of Inhibitors of
Bacterial
Toxins. Department of Biochemistry and
Molecular Biology Graduate
Student Orientation, University of Texas Medical
Branch, Galveston, TX
(September 26). |
||
- Schein,
C.H.
Dealing with 21st
Century Viruses. Xerox Research Center,
Rochester, NY (June 8). |
||
- Midoro-Horiuti,
T.,
Tiwari, R., Negi, S.S., Schein, C.H., Ning, B.,
Goldblum, R.M. and
Braun, W. Use of random peptide display and
novel Bioinformatics
Algorithm to Detect Conformational Epitopes of jun
a 1, the Major
Allergen of Mountain Cedar Pollen. The
Federation
of Clinical Immunology Societies (FOCIS) 2007,
Sheraton San Diego Hotel
& Marina, San Diego, CA (June 7-11). |
||
- Beasley, D.W.C.,
Zhang,
S., Bovshik, E.I., Maillard, R., Gromowski,
G.D., Volk, D.E., Schein, C.H., Huang, C.Y.-H.,
Gorenstein, D.G., Lee,
J.C. and Barrett, A.D.T. Critical Role of a
Tyrosine Corner Motif
in
the Evelope Protein Receptor-Binding Domain of
Mosquito-Borne
Flaviviruses. The Eighth International
Symposium on
Positive-Strand
RNA Viruses, Mayflower Hotel in Washington DC (May
26 - 30). |
||
- Garcia, T.,
Braun, W.
and Oberhauser, A.F. Molecular Insights into
the Mechanical
Properties of Titin I-Band Domains. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Ma, L., Garcia,
T.,
Wang, J., and Oberhauser, A.F. The
Nanomechanics of the REJ
Region of Polycystin-1. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Negi, S.S. and
Braun,
W. Mapping Conformational Epitopes on
Protein Surfaces Using
Phage Display Libraries. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Bilikallahalli,
M.,
Negi, S.S., Braun, W. and Halpert, J.R.
Dissecting the
Thermodynamics and Cooperativity of Ligand Binding
in Cytochrome
P450eryF: Implications to Drug-Drug Interactions
in Humans. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Power, T.D.,
Ivanciuc,
O.I., Negi, S.S. and Braun, W. Analysis of
Surface and Interface
Residue Properties Involved in Antibody/Antigen
Complexes. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Ivanciuc, O.I.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M.
and Braun, W.
Application of the Property Distance Index PD for
the Computer-Aided
Design of IgE Binding Peptides for the Allergen
Jun a 1. 12th
Annual Sealy
Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 18 - 19). |
||
- Tiwari, R., Ning,
B.,
Negi,
S.S., Endsley, M., Estes, D., Schein, C.H., Braun,
W., Midoro-Horiuti,
T. and Goldblum, R. Mapping Conformational
Epitopes on Jun a 1,
the Major Allergen of Mountain Cedar Pollen.
12th Annual Sealy
Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 18 - 19). |
||
- Chen, D., Misra,
M.,
Sower, L., Menche, G., Peterson, J.W., Kellogg,
G.E. and Schein,
C.H. Pharmacophore Based Selection and
Scoring of Inhibitors of
Bacterial Toxins. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Oezguen, N.,
Zhou, B.,
Negi, S.S., Ivanciuc, O.I. and Braun, W.
Homology Modeling of
Allergenic Proteins and Surface Analysis of Known
Epitopes. 12th
Annual Sealy Center for Structural Biology and
Molecular Biophysics
Symposium, University of Texas Medical Branch,
Galveston, TX (May 18 -
19). |
||
- Ghosh Dastidar,
S.,
Chen, D., Marks, G.E., Bryce, R.A. and Schein,
C.H. Molecular
Dynamics Simulations of the Interaction of Amyloid
β-Fibrils With
Peptides that Inhibit Aggregation. 12th
Annual Sealy Center for
Structural Biology and Molecular Biophysics
Symposium, University of
Texas Medical Branch, Galveston, TX
(May 18 - 19). |
||
- Garcia, T.,
Braun, W.
and Oberhauser,
A.F. Molecular Insights into the Mechanical
Properties of Titin
I-Band Domains. 15th Texas Protein Folder's
Meeting, Camp Allen,
TX (March 30 - April 1). |
||
- Garcia, T.,
Braun, W.
and Oberhauser, A.F. Molecular Insights into
the Mechanical
Properties of Titin I-Band Domains. 51st
Annual Biophysical
Society Meeting, Baltimore, MD (March 2 - 7). |
||
- Schein, C.H.,
Chen, D.,
Misra, M.,
Sower, L., Peterson, J.W. Computer Aided
Design of Bacterial
Toxins. 5th Annual American Society for
Microbiology (ASM)
Biodefense and Emerging Diseases Research Meeting,
The Renaissance
Hotel, Washington, DC. (February 27 - March 2). |
||
- Schein,
C.H.
Identifying Inhibitors of Bacterial Toxins by
Compound Library
Screening. Pharmacology and Toxicology
Seminar Series, University
of Texas Medical Branch, Galveston, TX. (February
9). |
||
2006 - Schein, C.H., Chen, D., Misra, M., Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. Non-Nucleotide Inhibitors of Anthrax Edema Factor Identified by an ab initio Screening Method. 2006 Texas Branch Meeting of The American Society for Microbiology, The University of Texas Medical Branch, Galveston, TX (November 16-18). |
||
- Misra, M., Tran,
V., Zhang, M.
and Schein, C.H. Flavitrack, an Annotated
Database to Compare
Flavivirus Sequences. The Changing Landscape
of Vaccine
Development - Vaccines for Global Health, Moody
Gardens Hotel,
Galveston, TX
(November 8-10). |
||
- Schein, C.H.,
Chen, D.,
Misra, M.,
Bryce, R.A., Marks, G.E., Kellogg,
G.E., Soto, C. and Peterson, J.W. The Eyes
Have It!: Using
Positional
Information to Select Inhibitors. Southwest
Regional A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX
(October 18-22). |
||
- Chen, D., Marks,
G.E.,
Bryce, R.A., Soto, C. and Schein, C.H.
Binding Modes for Inhibitors of β-amyloid Fibril
Formation. Southwest
Regional A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX
(October 18-22). |
||
- Chen,
D.,
Misra,
M., Sower, L., Menche, G., Peterson, J.W.,
Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based
Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. Southwest Regional
A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX
(October 18-22). |
||
- Garcia,
T.I.,
Oberhauser, A.F. and Braun, W. Molecular Insights
into the
Mechanical Properties of Titin I-band Domains. The
16th Keck Annual
Research Conference "Extraction and Integration of
Data in Biosystems",
Houston, TX (October 13). |
||
- Estrella-Jimeneza,
M.E.,
Gilbertson, S.R., Monk, K.A., Peterson,
J.W., Sower, L.,
Bush, K.L., Pawlick, J.E., Moen, S.T., Torres,
A.G., Schein, C.H.,
Chen, D., Misra, M. and Power, T.D.
Synthesis of Small Molecules
Inhibitors of Edema Factor. The 16th Keck Annual
Research Conference "Extraction and Integration of
Data in Biosystems",
Houston, TX (October 13). |
||
- Chen,
D.*, Marks, G.E., Bryce, R.A., Soto, C. and
Schein, C.H. Binding
Modes for Inhibitors of Beta-amyloid Fibril
Formation. The 16th Keck
Annual Research
Conference "Extraction and Integration of Data in
Biosystems", Houston,
TX (October 13). |
||
- Chen,
D., Misra,
M.*, Sower, L., Menche, G., Peterson, J.W.,
Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based
Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. The 16th Keck
Annual Research
Conference "Extraction and Integration of Data in
Biosystems", Houston,
TX (October 13). |
||
- Misra,
M.,
Tran, V., Zhang, M. and Schein, C.H.*
Flavitrack, an
Annotated
Database to Compare Complete Flavivirus Sequences.
The 16th Keck Annual
Research Conference "Extraction and Integration of
Data in Biosystems",
Houston, TX (October 13). |
||
- Chen,
D., Misra,
M., Sower, L., Menche, G., Peterson, J.W.,
Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based
Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. UTMB Sealy Center
on Aging in
conjunction with Research Services 10th Annual
Forum on Aging,
University of Texas Medical Branch, Galveston, TX
(October 4). |
||
- Zhang, M., Misra,
M. and
Schein, C.H. Following Virulence Evolution
by Assigning License
Plates to Flaviviruses. High School Summer
Research
Program Poster Session, University of Texas
Medical Branch, Galveston,
TX (July 28). |
||
- Guevara, E. and
Schein,
C.H. The Need to Design a Vaccine Against
Dengue Virus
(Flavivirus Family). High School Summer Research
Program Poster
Session,
University of Texas Medical Branch, Galveston, TX
(July 28). |
||
- Tran, V., Misra,
M. and
Schein, C.H. Identifying Functional 3-D
Motifs with a Database of
Flavivirus Mutations. Medical Student Summer
Research Program (MSSRP)
Poster Session, University of Texas Medical
Branch, Galveston, TX (June
22). |
||
- Garcia,
T.I.,
Oberhauser, A.F. and Braun, W. Examining
Mechanically
Important Residue Combinations in Titin I-band
Domains. 11th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
- Misra,
M.,
Chen, D.,
Menche, G., Power, T.D., Peterson, J.W. Schein,
C.H. Designing
General Inhibitors of Adenylate Cyclase Toxins.
11th Annual Sealy
Center for Structural Biology and Molecular
Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
- Power,
T.D., Negi, S.S., Ivanciuc, O.
and Braun, W. Physical-chemical
Properties of Conformational
Epitopes. 11th Annual Sealy
Center for Structural
Biology and Molecular
Biophysics Symposium, University of Texas Medical
Branch, Galveston, TX
(May 19-20). |
||
- Negi, S.S.,
Kolokoltsov,
A.A., Schein, C.H., Davey, R.A. and Braun,
W. Predicting
Interacting Residues on the Protein Surface and
Its Application to VEEV
Envelope Proteins. 11th Annual Sealy Center for
Structural Biology and
Molecular
Biophysics Symposium, University of Texas Medical
Branch, Galveston, TX
(May 19-20). |
||
- Oezguen, N.,
Espinoza,
R.C.D., Cattaneo, R.B. and Braun, W. 3D
Model of the Complex of
Measles Virus Haemagglutinin and its Human
Receptor SLAM. 11th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium, University of Texas Medical
Branch, Galveston, TX
(May 19-20). |
||
- Ivanciuc, O.,
Midoro-Horiuti, T., Xie, L., Schein, C.H.,
Goldblum, R. and Braun,
W. Design of IgE Binding Peptides for the
Allergen Jun a 1 using
the Property Distance Index PD. 11th Annual Sealy
Center for Structural
Biology and Molecular
Biophysics Symposium, University of Texas Medical
Branch, Galveston, TX
(May 19-20). |
||
-
Power, T.D., Negi, S.S., Ivanciuc, O.
and Braun, W. Physical-chemical
Properties of Conformational
Epitopes. Bugs, Drugs and Vaccines: Securing
Our Future, Cosponsored by
the Academy of Medicine, Engineering and
Science of Texas and the
University of Texas System Office of Health
Affairs, Moody Gardens
Hotel, Galveston, TX (April 5-6). |
||
- Ivanciuc, O. and
Braun,
W. Computational Vaccinology with Peptide
Physico-chemical
Properties and Quantitative Structure-Activity
Relationships. Bugs,
Drugs and Vaccines: Securing Our Future,
Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and
the University of Texas
System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX
(April 5-6). |
||
- Ivanciuc, O.,
Midoro-Horiuti, T., Xie, L., Schein, C.H.,
Goldblum, R. and Braun,
W. Computer-Aided Design of IgE Binding
Peptides Using the
Property Distance Index PD. Bugs,
Drugs
and Vaccines: Securing Our Future, Cosponsored
by the Academy of
Medicine, Engineering and Science of Texas and
the University of Texas
System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX
(April 5-6). |
||
- Negi, S.S.,
Kolokoltsov,
A.A., Schein, C.H., Davey, R.A. and Braun,
W. Predicting
Interacting Residues on the Protein Surface and
Its Application to VEEV
Envelope Proteins. Bugs,
Drugs and Vaccines: Securing Our Future,
Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and
the University of Texas
System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX
(April 5-6). |
||
- Misra, M., Chen,
D.,
Menche, G., Power, T.D., Peterson, J.W. Schein,
C.H. Designing
General Inhibitors of Adenylate Cyclase Toxins.
Bugs,
Drugs and Vaccines: Securing Our Future,
Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and
the University of Texas
System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX
(April 5-6). |
||
- Espinoza, R.C.D.,
Oezguen, N., Cattaneo, R.B. and Braun, W.
Determination of the
Potential Receptor Binding Site of the Measles
Virus Haemagglutinin. Bugs,
Drugs
and Vaccines: Securing Our Future, Cosponsored
by the Academy of
Medicine, Engineering and Science of Texas and
the University of Texas
System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX
(April 5-6). |
||
- Xie, F.,
Jakubowski, J.,
Amare, A., Cummins, S.F., Nagle, G., Schein, C.H.
and Sweedler,
J. Characterizing Pheromones in Aplysia
Californica Using Liquid
Chromatography-mass Spectrometry. PITTCON,
Orlando, FL (March 12-17). |
||
- Chen,
D., Menche, G., Power, T.D.,
Estrella-Jimenez, M.E., Gilbertson, S.R.,
Peterson, J.W. and Schein,
C.H. Comparison of Docking Methods for
Designing Inhibitors
of Anthrax Edema Factor. 2006
McLaughlin Colloquium on Infection
and Immunity,
University of Texas Medical
Branch, Galveston, TX (January 19). |
||
- Power,
T.D., Chen, D., Zhou, B., Braun,
W.,
Peterson, J.W. and Schein, C.H.
Evolution of Anthrax Protective
Antigen Channel. 2006
McLaughlin Colloquium on Infection
and Immunity,
University of Texas Medical
Branch, Galveston, TX (January 19). |
||
- Oezguen, N.,
Negi, S.,
Cattaneo, R.B., Braun, W. Comparison of the
Surface Properties of the Domain of Human SLAM
(CD150) Recognized by
Measles Virus with that of its Mouse Homologue,
and Implications for
Cell Entry. 2006 McLaughlin
Colloquium on Infection
and Immunity,
University of Texas Medical
Branch, Galveston, TX (January 19). |
||
2005 - Garcia, T.I., Oberhauser, A.F. and Braun, W. Predicting Mechanically Important Residue Combinations in Titin I-band Domains. Keck Center for Interdisciplinary Bioscience Training 2005 Annual Research Conference, Hilton Hotel, University of Houston, Houston, TX (October 6-7). |
||
-
Chen, D., Menche, G., Power, T.D.,
Estrella-Jimenez, M.E., Gilbertson, S.R.,
Peterson, J.W. and Schein,
C.H. Comparing Different Docking Methods
for Designing Inhibitors
of Anthrax Edema Factor.
Keck Center for Interdisciplinary Bioscience
Training 2005 Annual
Research Conference, Hilton Hotel, University
of Houston, Houston, TX
(October 6-7). |
||
-
Edwards, A., Ivanciuc, O., Oezguen,
N. and Schein, C.H. Correlation
Between Allergy to Insect
Proteins and Asthma: Relating Cross Reactivity
to the Sequence and
Structure of Allergens. High School
Summer Research Program
Poster Session, University
of Texas Medical
Branch, Galveston, TX
(July 29). |
||
- Garcia, T.I., Braun, W. and Oberhauser, A.F. Experimental and Computational Investigations of a Beta--Sandwich Unfolding Pathway. Sealy Center for Structural Biology 10th Annual Structural Biology Symposium, University of Texas Medical Branch, Galveston, TX (May 20-21). | ||
-
Avery, M.H., Oezguen, N., Schein, C.H.,
Zhou, B. and Braun, W.
Prediction of 3D Structures of Proteins by
Template Combination:
Application to the Walnut Allergen Jug r 2.
Sealy Center for Structural
Biology 10th Annual Structural Biology
Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
||
-
Ravindran, A., Ivanciuc, O. and Braun,
W. Bioinformatics Study
for the Tomato Protein NP24 from the
Pathogenesis-Related 5 Family.
Sealy Center for Structural Biology 10th
Annual Structural Biology
Symposium, University of Texas Medical Branch,
Galveston, TX (May
20-21). |
||
-
Roychowdhury, A., Ivanciuc, O. and
Braun, W. Computational
Investigation of Allergenic Determinants for
the Buckwheat Allergen Fag
e 1. Sealy Center for Structural Biology 10th
Annual Structural Biology
Symposium, University of Texas Medical Branch,
Galveston, TX (May
20-21). |
||
-
Ivanciuc, O., Midoro-Horiuti, T.,
Schein, C.H., Brooks, E., Goldblum,
R. and Braun, W. Protein Allergenicity
Prediction with the
Property Distance Index PD. Sealy Center for
Structural Biology 10th
Annual Structural Biology Symposium,
University of Texas Medical
Branch, Galveston, TX (May 20-21). |
||
-
Power, T.D., Chen, D., Menche, G.,
Monk, K.A., Estrella-Jimenez,
M.E., Bush, K.L., Wenglikowski, A.,
Gilbertson, S.R., Braun, W.,
Peterson, J.W. and Schein, C.H.
Correlating Docking Results with
IC50 Data for Inhibitors of Anthrax
Edema Factor. Sealy
Center for Structural Biology 10th Annual
Structural Biology Symposium,
University of Texas Medical Branch, Galveston,
TX (May 20-21). |
||
-
Zhou, B. and Braun, W. TESEP: A
Novel Approach for Template
Selection. Sealy Center for Structural Biology
10th Annual Structural
Biology Symposium, University of Texas Medical
Branch, Galveston, TX
(May 20-21). |
||
-
Oezguen, N., Zhou, B., Avery, M., Negi,
S.S., Ivanciuc, O.I., Garcia,
T.I., Schein, C.H., Labesse, G. and Braun,
W. Large Scale
Homology Modeling of Allergenic Proteins.
Sealy Center for Structural
Biology 10th Annual Structural Biology
Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
||
- Oezguen, N.,
Hindupur,
A. and Braun, W. Sequence Analysis of
P450 Families CYP1,
CYP2 and CYP3. Sealy Center for Structural Biology
10th Annual
Structural Biology Symposium, University of Texas
Medical Branch,
Galveston, TX (May 20-21). |
||
-
Negi, S.S., Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun,
W. Predicting interacting residues on
the protein surface and its
application to VEEV Envelope Proteins. Sealy
Center for Structural
Biology 10th Annual Structural Biology
Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
||
- Schein, C.H.,
Zhou, B.,
Power, T.D., Negi, S.S., Peterson, J.W. and Braun,
W.
Stereophysicochemical Variability Plots provide a
rapid way to analyze
epitopes and interacting sites of proteins from
pathogens. 2005 Texas
BioDefense Summit IV: Texas Leadership in
BioDefense, Preparedness and
Product Development, T Bar M Ranch, New
Braunfels, TX
(April 28-29). |
||
-
Schein, C.H., Oezguen, N., Volk, D.E.,
Garimella, R., Paul, A.V. and
Braun, W. NMR structure of poliovirus
VPg in a stabilizing
solvent. The 46th Experimental Nuclear
Magnetic Resonance Conference
(ENC), Rhode Island Convention Center,
Providence, RI (April 10-15). |
||
-
Chen, D., Power, T.D., Monk, K.A.,
Bush, K.L., Wenglikowski, A., Gilbertson,
S.R., Braun, W., Peterson,
J.W.
and Schein, C.H. Correlating Docking
Results with IC50
Data for
Inhibitors of Anthrax Edema Factor.
Sealy Center for Molecular
Science & Sealy Center for Cancer Cell
Biology: 13th Annual Science
Forum, University of Texas Medical Branch,
Galveston, TX (April 8). |
||
-
Ivanciuc, O., Midoro-Horiuti, T.,
Schein, C.H., Brooks, E., Goldblum, R. and
Braun, W.
Cross-Reactivity Investigation with the
Property Distance Index PD.
Sealy Center for Molecular Science & Sealy
Center for Cancer Cell
Biology: 13th Annual Science Forum, University
of Texas Medical Branch,
Galveston, TX (April 8). |
||
-
Oezguen, N., Negi, S.S., T�z�n, E.,
Christadoss, P. and Braun, W. Structural
Analysis of the
α9-Subunit of the Neuronal Acetylcholine
Receptor. Sealy Center for
Molecular Science & Sealy Center for
Cancer Cell Biology: 13th
Annual Science Forum, University of Texas
Medical Branch, Galveston, TX
(April 8). |
||
2004 - Ivanciuc, O., Midoro-Horiuti, T., Schein, C.H., Brooks, E., Goldblum, R. and Braun, W. Computational Tools for Allergenicity Prediction. McLaughlin Symposium: The Changing Landscape in Vaccine Development "Translating Vaccines for Emerging Diseases and Biodefense to the Marketplace", San Luis Hotel, Galveston, TX (November 12-14). |
||
-
Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W.
Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV)
Envelope Proteins. McLaughlin
Symposium: The Changing
Landscape
in Vaccine Development "Translating Vaccines
for Emerging Diseases and
Biodefense to the Marketplace", San Luis
Hotel, Galveston, TX (November
12-14). |
||
- Xie, L., Midoro-Horiuti,
T., Ivanciuc,
O., Schein, C.H.,
Braun, W.
and Goldblum,
R.M.
Developing New Allergen Vaccine
Using Phylogenetic Approach. McLaughlin
Symposium:
The Changing Landscape
in Vaccine Development "Translating
Vaccines for Emerging Diseases and
Biodefense to the Marketplace", San
Luis Hotel, Galveston, TX (November
12-14). |
||
-
Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W.
Variability and Functional Analysis of the
Anthrax Edema and Lethal
Factor Toxins. 2004 Texas Branch Meeting of
The American Society for
Microbiology, Crowne Plaza Hotel, Houston, TX
(November 4-6). |
||
-
Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W.
Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV)
Envelope Proteins. 2004
Texas Branch Meeting of The American Society
for Microbiology, Crowne
Plaza Hotel, Houston, TX (November 4-6). |
||
- Ivanciuc,
O. and Braun,
W. In
Silico Screening of MHC Peptide
Affinity with Quantitative Structure-Activity
Relationships. XXI
Southwest Theoretical Chemistry Conference,
Gaido�s Seaside Inn,
Galveston, TX (October 22-23). |
||
-
Garcia, T., Torres, M., Zhou, B.,
Schein, C.H., Ivanciuc, O. and Braun, W.
Large Scale Data Mining
of Allergenic Proteins. Keck/HAMBP Annual
Research Conference, NASA
Hilton, Clear Lake, TX (October 8). |
||
-
Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W. Variability and
Functional Analysis of the
Anthrax Edema and Lethal Factor Toxins.
Keck/HAMBP Annual Research
Conference, NASA Hilton, Clear Lake, TX
(October 8). |
||
-
Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel
Software Tool for Efficient
Data Mining and Functional Annotation of
Genomic Sequence Databases. Keck/HAMBP
Annual
Research Conference, NASA Hilton, Clear Lake,
TX (October 8). |
||
-
Oezguen, N., Power, T.D., Schein, C.H.,
Zhou, B., Mathura, V., Izumi, T. and Braun,
W. Sequence
decomposition of metal sites and MD
simulations suggest a novel "moving
ion" mechanism for the DNA repair
endonuclease APE1. Keck/HAMBP
Annual Research Conference, NASA Hilton, Clear
Lake, TX (October 8). |
||
-
Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W.
Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV)
Envelope Proteins.
Keck/HAMBP Annual Research Conference, NASA
Hilton, Clear Lake, TX
(October 8). |
||
- Ivanciuc,
O., Midoro-Horiuti,
T.,
Schein, C.H., Brooks, E., Goldblum, R. and
Braun, W. SDAP sequence similarity
search for food allergenicity prediction.
Keck/HAMBP Annual Research
Conference, NASA Hilton, Clear Lake, TX
(October 8). |
||
-
Oezguen, N., Power, T.D., Schein, C.H.,
Zhou, B., Mathura, V., Izumi, T. and Braun,
W. Sequence
decomposition of metal sites and MD
simulations suggest a novel "moving
ion" mechanism for the DNA repair
endonuclease APE1. 60th ACS
Southwest Regional Meeting, Fort Worth, TX
(September 29-October 2). |
||
-
Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W.
Variability and Functional Analysis of the
Anthrax Edema and Lethal
Factor Toxins. Annual McLaughlin Fellowship
Colloquium on Infection and
Immunity, University of Texas Medical Branch,
Galveston, TX (September
14). |
||
-
Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and
Braun, W. Predicting Interacting
Surfaces in Venezuelan Equine
Encephalitis Virus (VEEV) Envelope Proteins.
Annual McLaughlin Fellowship Colloquium
on Infection and
Immunity, University of Texas Medical Branch,
Galveston, TX (September
14). |
||
-
Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel
Software Tool for Efficient
Data Mining and Functional Annotation of
Genomic Sequence Databases.
Sealy Center for Molecular Science-Science
Forum 2004, University of
Texas Medical Branch, Galveston, TX (May 6-7). |
||
-
Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and
Braun, W. Predicting Interacting
Surfaces in Venezuelan Equine
Encephalitis Virus (VEEV) Envelope Proteins.
Sealy Center for Molecular
Science-Science Forum 2004, University of
Texas Medical Branch,
Galveston, TX (May 6-7). |
||
-
Oezguen, N., Schein, C.H., Power,T.D.,
Tadahide Izumi, T. and Braun
W. Moving ion mechanism in APE1. Sealy
Center for Molecular
Science-Science Forum 2004, University of
Texas Medical Branch,
Galveston, TX (May 6-7). |
||
-
Power, T.D., Oezguen, N., and Braun,
W. Analysis of the
catalytic mechanism of human APE1 by QM/MM
ONIOM calculations. Sealy
Center for Molecular Science-Science Forum
2004, University of Texas
Medical Branch, Galveston, TX (May 6-7). |
||
-
Ivanciuc, O. and Braun, W. A QSAR
Approach for Predicting MHC
Binding Peptides in an Antigen Sequence. Sealy
Center for Molecular
Science-Science Forum 2004, University of
Texas Medical Branch,
Galveston, TX (May 6-7). |
||
-
Oezguen, N., Schein, C.H., Power, T.D.,
Izumi, T. and Werner Braun, W. Moving
ion mechanism in APE1.
Sealy
Center for Structural Biology 9th Annual
Structural Biology Symposium,
University of Texas Medical Branch, Galveston,
TX
(April 30-May 1). |
||
-
Power, T.D., Oezguen, N. and Werner
Braun, W. Analysis of the catalytic
mechanism of human APE1 by
QM/MM
ONIOM calculations. Sealy Center for
Structural Biology 9th Annual
Structural
Biology Symposium, University of Texas Medical
Branch, Galveston, TX
(April 30-May 1). |
||
-
Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel
Software Tool for Efficient
Data
Mining and Functional Annotation of Genomic
Sequence Databases. Sealy
Center for Structural Biology 9th Annual
Structural Biology Symposium,
University of Texas Medical Branch, Galveston,
TX (April 30-May 1). |
||
-
Negi, S.S, Kolokoltsov, A.A., Zhou,
B., Schein, C.H., Davey, R.A. and Braun,
W. Predicting
Interacting
Surfaces in Venezuelan Equine Encephalitis
Virus (VEEV) Envelope
Proteins. Sealy Center for Structural Biology
9th Annual Structural
Biology
Symposium, University of Texas Medical Branch,
Galveston, TX (April
30-May 1). |
||
-
Ivanciuc, O. and Braun, W.
Quantitative Structure-Activity Relationships
for the Peptide Affinity
for MHC Class I HLA-A*0201. Sealy Center for
Structural Biology 9th
Annual Structural Biology Symposium,
University of Texas Medical
Branch,
Galveston, TX (April 30-May 1). |
||
2003 - Peterson, J.W., Gessell-Lee, D., Saini, S.S., Weisbaum, D., Lemoins, P., Morris, A.P., Fernandez, W.A., Schein, C.H. and Braun, W. Novel inhibitors of cholera toxin-induced intestinal fluid secretion. 10th Asian Conference on Diarrhoeal Diseases and Nutrition (ASCODD), Dhaka, Bangladesh (December 7-9). |
||
-
Schein, C.H., Ivanciuc, O. and Braun,
W. Determining common
physical chemical properties of IgE epitopes
with a database of food
allergens. XI International Food Allergy
Symposium, The American
College of Allergy, Asthma and Immunology, New
Orleans, LA (November
7-12). |
||
-
Fernandez, W.A., Schein, C.H.,
Venkatarajan, M.S., Peterson, J.W. and
Braun, W. Sequence and structural
decomposition of adenyl
cyclases and edema factor reveals similar
functional regions.
Sealy Center for Molecular Sciences (SCMS) and
Microbiology and
Immunology Science Forum, Galveston, TX (May
30). |
||
-
Ivanciuc, O.I., Schein, C.H.,
Midoro-Horiuti, T., Goldblum, R. and
Braun, W. Detecting potential
IgE-binding sites on food proteins
using the SDAP web server. 8th Annual
Sealy Center for Structural
Biology (SCSB) Symposium, Galveston, TX (May
2-4). |
||
-
Oezguen, N., Schein, C.H.,
Venkatarajan, M.S., Izumi, T. and Braun,
W. Dynamics of the Mg2+ metal ion in
APE1. 8th Annual Sealy
Center for Structural Biology (SCSB)
Symposium, Galveston, TX (May 2-4). |
||
-
Fernandez, W.A., Schein, C.H.,
Venkatarajan, M.S., Peterson, J.W. and
Braun, W. MASIA sequence and structural
decomposition of adenyl
cyclases and edema factor reveals similar
functional regions. 8th
Annual Sealy Center for Structural Biology
(SCSB) Symposium, Galveston,
TX (May 2-4). |
||
-
Schein, C.H., Wang, E., Ivanciuc, O.,
Ji, Z., Davey, R., Weaver, S.
and Braun, W. Determining functional
areas of Venezuelan equine
encephalitis virus proteins. 2003 Annual
Meeting of the Gulf Coast
Tropical Medicine Association, (GCTMA),
Galveston, TX (April 24-26). |
||
-
Fernandez, W.A., Oezguen, N., Schein,
C.H., Braun, W. and Peterson,
J.W. Structural basis for the
interaction of PGE2-imidazole
inhibitor with anthrax edema factor and
mammalian adenylyl
cyclases. The 2003 Annual Meeting of the
Gulf Coast Tropical
Medicine Association (GCTMA), Galveston, TX
(April 24-26). |
||
-
Schein, C.H., Ivanciuc, O. and Braun,
W. Structural database
approach to determine common properties of
allergenic proteins.
Monsanto Research Center, St. Louis, MO (March
24). |
||
-
Ivanciuc, O.I., Schein, C.H.,
Venkatarajan, M.S. and Braun, W.
Prediction of food allergenicity using the
SDAP database and
computational tools. 47th Annual
Biophysical Society Meeting, San
Antonio, TX (March 1-5). |
||
-
Xu, Y., Oezguen, N. and Braun, W.
A GUI based NOAH/DIAMOD
program for automated NOESY spectra assignment
and protein structure
determination. 47th Annual Biophysical
Society Meeting, San
Antonio, TX (March 1-5). |
||
-
Oezguen, N., Schein, C.H.,
Venkatarajan, M.S., Izumi, T. and Braun,
W.A. Dynamics of the Mg2+ metal ion and
the metal binding sites
in APE1. 47th Annual Biophysical Society
Meeting, San Antonio, TX
(March 1-5). |
||
2002 - Mathura, V., Ivanciuc, O., Oezguen, N., Schein, C., Xu, Y. and Braun, W. Evaluating sequence alignment of fold-recognition tools by quantitative scoring of physical-chemical property based motifs. 5th Meeting on the Critical Assessment of Structural Prediction (CASP5), Asilomar Conference Center, Lawrence Livermore National Laboratories, Pacific Grove, CA (December 1-5). |
||
-
Venkatarajan, M.S., Schein, C.H.,
Ivanciuc, O.I., Xu, Y. and Braun,
W. Automated
generation of property based
motifs to search for functional neighbors and
to improve sequence
alignments. 5th Meeting on the Critical
Assessment of Structural
Predictions (CASP5), Asilomar Conference
Center, Lawrence Livermore
National Laboratories, Pacific Grove, CA
(December 1-5). |
||
-
Ivanciuc, O., Schein, C.H., Mathura,
V., Midoro-Horiuti, T.,
Goldblum,. R., Brooks, E. and Braun, W.
Structural analysis of
IgE epitopes. American College of
Allergy, Asthma and Immunology,
San Antonio, TX (November 15-20). |
||
-
Schein, C.H., Oezguen, N.,
Venkatarajan, M.S. and Braun, W.
Using MASIA to define metal box architecture
in nucleases and
phosphatases. 58th Southwest Region
American Chemical Society
(ACS) Meeting, Hilton Austin North and Towers,
Austin, TX (November
3-6). |
||
-
Ivanciuc, O., Schein, C.H. and Braun,
W. SDAP: Database
and computational tools for allergenic
proteins. Keck/GCC
Bioinformatics Consortium - 2002
Bioinformatics Symposium, Rice
University, Houston, TX (October 14-15). |
||
-
Oezguen, N., Schein, C.H., Izumi, T.
and Braun, W. Dynamics of
the metal binding sites in APE1.
Keck/GCC Bioinformatics
Consortium - 2002 Bioinformatics Symposium,
Rice University, Houston,
TX (October 14-15). |
||
-
Oezguen, N., Schein, C.H., Izumi, R.
and Braun, W. APE1:
mobility of metal ion and recognition sites at
the protein/DNA
interface of wild type and mutant
apurinic/apyrimidinic
endonucleases. 7th Annual Structural
Biology Symposium,
Galveston, TX (May 17-19). |
||
-
Ivanciuc, O., Schein, C.H.,
Venkatarajan, M.S. and Braun, W.
Structural characterization of allergenic
determinants with the web
server SDAP. 7th Annual Structural
Biology Symposium, Galveston,
TX (May 17-19). |
||
-
Garimella, R., Xu, Y., Rajarathnam, K.,
Schein, C.H., Nagle, G.T.,
Painter, S.D. and Braun, W. The solution
structure of a
water-borne pheromone from the mollusk,
aplysia californica determined
with NMR. 7th Annual Structural Biology
Symposium, Galveston, TX
(May 17-19). |
||
-
Midoro-Horiuti, T., Mathura, V.,
Schein, C.H., Braun, W., Chin,
C.C.Q., Yu, S., Watanabe, M., Lee, J.C.,
Brooks, E.G. and Goldblum,
R.M. Peptide mimetics for IgE epitopes
of Jun A 1, the major
allergen of mountain cedar pollen. 7th
Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
-
Mathura, V., Schein, C.H., Oezguen, N.
and Braun, W. Defining
physical-chemical properties based motifs
specific for members of the
APE family of DNA repair proteins. 7th
Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
-
Soman, K.V., Venkatarajan, M.S. and
Braun, W. Polar and apolar
areas on membrane protein surfaces. 7th
Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
-
Xu, Y., Oezguen, N. and Braun, W.
A GUI design of NOAH/DIAMOD
programs for automated NOESY spectra
assignment and protein structure
determination. 7th Annual
Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
-
Venkatarajan, M.S., Schein, C.H.,
Oezguen, N. and Braun, W.
(2002) Sequence and structural analysis
of APE 1 protein family
using physical-chemical properties based
motifs. Recent Advances in
Computational Molecular Biology, Washington DC
(April 18-21). |
||
-Oezguen,
N., Garimella, R., Schein,
C.H., Xu, Y. and Braun, W.
Automatic NOESY assignment and structure
determination of the protein
structures using NOAH/DIAMOD. 43rd
Experimental Nuclear Magnetic
Resonance Conference (ENC), Asilomar, CA
(April 14-19). |
||
-
Soman, K.V., Venkatarajan, M.S. and
Braun, W. Distribution of
polar and apolar areas on membrane protein
surfaces. 46th Annual
Biophysical Society Meeting, San Francisco, CA
(February 23-27). |
||
-
Schein, C.H., Ozgun, N., Izumi, T.,
Venkatarajan, M.S. and Braun,
W. Structural and functional motifs of
apurinic/apyrimidinic
endonuclease. 2002 Keystone Symposia,
Frontiers of Structural
Biology, Session J2, Breckenridge, CO (January
5-11). |
||
2001 - Venkatarajan, M.S., Soman, K.V. and Braun, A. 3D model of antiapoptotic protein murine BCL-2. 45th Annual Biophysical Society Meeting, Boston, MA (February). |
||
-
Oezguen, N., Kosynkina, L., Xu, Y.,
Rajarathnam, K. and Braun,
W. Minimal NMR spectral data needed for
automated fold
determination by NOAH/DIAMOD. 42nd
Annual Experimental Nuclear
Magnetic Resonance (ENC) Conference, Orlando,
FL (March). |
||
-
Garimella, R., Schein, C.H., Xu, Y.,
Nagle, G.T., Painter, S.D. and
Braun, W. NMR structure determination of
attractin, a pheromone
protein from the mollusk Aplysia
Californica. 42nd Annual
Experimental Nuclear Magnetic Resonance (ENC)
Conference, Orlando, FL
(March). |
||
-
Schein, C.H., Oezguen, N. and Braun,
W. Relating structure and
function of endonucleases that repair abasic
sites in DNA. Life
Sciences Forum, Sealy Center for Molecular
Science, Galveston, TX
(March 28). |
||
-
Venkatarajan, M.S., Hasan, R.J., Urvil,
P., Pawelczyk, E., Goluszko,
P., Selvarangan, R., Nowicki, S., Nowicki, B.
and Braun, W.
Structure-function analysis of decay
accelerating factor using modeling
and mutational mapping techniques. 6th
Annual Structural Biology
Symposium, Galveston, TX (May). |
||
-
Soman, K.V., Venkatarajan, M.S. and
Braun, W. Distribution of
polar and apolar regions on membrane protein
surfaces. 6th Annual
Structural Biology Symposium, Galveston, TX
(May). |
||
-
Oezguen, N., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
structure determination from 3D heteronuclear
edited NMR spectra using
NOAH/DIAMOD. 6th Annual Structural
Biology Symposium, Galveston,
TX (May). |
||
-
Schein, C.H., Oezguen, N.,
Venkatarajan, M.S., Izumi, T. and Braun,
W. Defining the mode of action of APE1
using MASIA motif
searching, MD-simulations and site directed
mutagenesis. 6th
Annual Structural Biology Symposium,
Galveston, TX (May). |
||
-
Garimella, R., Schein, C.H., Xu, Y.,
Rajarathnam. K., Nagle, G.T.,
Painter, S.D. and Braun, W. NMR-solution
structure of attractin,
a water-borne pheromone from the mollusk
Aplysia Californica. 6th
Annual Structural Biology Symposium,
Galveston, TX (May). |
||
-
Midoro-Horiuti, T., Takako, F., Brooks,
E.G., Goldblum, R., Soman,
K., Mathura, V., Garimella, R., Braun, W. and
Schein, C.H.
Structural studies of cedar pollen
allergens. 6th Annual
Structural Biology Symposium, Galveston, TX
(May). |
||
-
Schein, C.H., Ozgun, N., Izumi, T. and
Braun, W. Defining
molegos with MASIA: a modular approach
to nuclease
function. 122nd American Chemical
Society National Meeting,
Chicago, IL (August). |
||
2000 - Soman, K. and Braun, W. 3-D structures of proteins from experimental and theoretical constraints. 44th Annual Biophysical Society Meeting, New Orleans, LA (January). |
||
-
Soman, K. and Braun, W. 3-D
structures of proteins from
constraints: a new approach. 8th
Annual Protein Folders
Meeting, Camp Allen, TX (March). |
||
-
Kosynkina, L., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
assignment and 3D structure determination of
the myeloid progenitor
inhibitory factor-1. 41st Experimental
Nuclear Magnetic Resonance
Conference (ENC), Pacific Grove, CA (April). |
||
-
Venkatarajan, M.S. and Braun, W.
A new vector representation of
amino acids based on large number of
physico-chemical properties.
5th Annual Structural Biology Symposium, UTMB,
Galveston, TX (May). |
||
-
Soman, K. and Braun, W.
Calculation of protein structures from
constraints. 5th Annual Structural
Biology Symposium, UTMB,
Galveston, TX (May). |
||
-
Kosynkina, L., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
assignment and 3D structure determination of
the myeloid progenitor
inhibitory factor-1 (MPIF-1). 5th Annual
Structural Biology
Symposium, UTMB, Galveston, TX (May). |
||
-
Venkatarajan, M.S. and Braun, W.
Quantitative descriptors for
amino acids based on physico-chemical
properties using vector
representation. Research Retreat for the
W.M. Keck Center for
Computational Biology, Rice University and
Baylor College of Medicine,
Houston, TX (October). |
||
-
Schein, C.H., Nagle, G.T., Page, J.S.,
Sweedler, J.V., Xu, Y.,
Garimella, R., Painter, S.D. and Braun,
W. Biophysical
characterization of aplysia attractin, a
marine pheromone
protein. Research Retreat for the W.M.
Keck Center for
Computational Biology, Rice University and
Baylor College of Medicine,
Houston, TX (October). |
||
-
Soman, K. and Braun, W.
Calculating correct protein structures
without x-ray data and without NOE�s.
Research Retreat for the
W.M. Keck Center for Computational Biology,
Rice University and Baylor
College of Medicine, Houston, TX (October). |
||
-
Schein, C.H., Nagle, G.T., Page, J.S.,
Sweedler, J.V., Xu, Y.,
Garimella, R., Painter, S.D. and Braun,
W. Biophysical
characterization of aplysia attractin, a
marine pheromone
protein. Cambridge Healthtech
Institute�s 2nd Annual Protein
Structure: Models, Folds, and Function
Analyses Applications for
Target Validation, Tysons Corner, McLean, VA
(October). |
||
- Mathura, V.S., Soman, K.V., Schein, C.H., Xu, Y. and Braun, W. 4th Meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP). Asilomar Conference Center, Pacific Grove, CA (December). |