Complete List of Braun Group Publications
click on the lines with a green ball ( ) for abstracts or full papers
(110) Mantha, A.K., Oezguen, N., Bhakat, K.K.,
Izumi, T., Braun, W., Mitra, S. (2008)
 Unusual
Role of a Cysteine Residue in Substrate Binding and Activity of Human
AP-Endonuclease 1.
J. Mol. Biol.,
379(1), 28-37.
(109) Navaratnarajah, C.K., Vongpunsawad, S.,
Oezguen, N., Stehle, T., Braun, W., Hashiguchi, T., Maenaka, K.,
Yanagi, Y. and Cattaneo, R. (2008)
Dynamic
interaction of the measles virus hemagglutinin with its receptor SLAM.
J. Biol. Chem.,
283(17), 11763-11771.
(108) Negi, S.S., Carol, A., Pandya, S., Braun,
W. and Anderson, L. (2008)
Co-Localization
of Glyceraldehyde-3-Phosphate Dehydrogenase with Ferredoxin-NADP
Reductase in Pea Leaf Chloroplasts.
J. Struct. Biol., 161(1),
18-30.
(107) Ivanciuc, O. and Braun, W. (2007)
Robust
quantitative modeling of peptide binding affinities for MHC molecules
using physical-chemical descriptors.
Protein Pept. Lett.,
14(9), 903-916.
(106) Negi, S., Schein, C.H., Oezguen, N., Power,
T.D. and Braun, W. (2007)
InterProSurf:
a web server for predicting interacting sites on protein surfaces.
Bioinformatics,
23(24), 3397-3399.
(105) Negi, S. and Braun, W. (2007)
Statistical
analysis of physical-chemical properties and prediction of
protein-protein interfaces.
J. Mol. Model.,
13(11), 1157-1167.
(104) Oezguen, N., Schein, C.H., Peddi,
S.R., Power, T.D., Izumi, T. and Braun, W. (2007)
A
"moving metal mechanism" for substrate cleavage by DNA repair
endonuclease APE-1.
Proteins,
68(1), 313-323.
(103) Schein, C.H. Ivanciuc O. and Braun,
W. (2007)
Bioinformatics
Approaches to Classifying Allergens and Predicting Cross-reactivity.
Immunol. Allergy Clin.
North Am., 27(1), 1-27.
(102) Schein, C.H., Ivanciuc, O. and Braun,
W. (2006)
Structural
Database of Allergenic Proteins (SDAP).
Food Allergy,
Edited by S.J. Maleki, copyright 2006 ASM Press, Washington D.C.
257-283.
(101) Negi, S.S., Kolokoltsov, A.A., Schein, C.H., Davey, R.A. and Braun,
W.
(2006)
Determining
functionally important amino acid residues of the E1 protein of
Venezuelan equine encephalitis virus.
J. Mol. Model. (Online), 12(6),
921-929.
(100) Schein, C.H.,
Oezguen, N., Volk, D.E., Garimella, R., Paul, A. and Braun, W.
(2006)
NMR
structure of the viral peptide linked to the genome (VPg) of poliovirus.
Peptides,
27(7), 1676-1684.
(99) Muralidhara, B.K., Negi., S., Chin, C.C., Braun,
W. and Halpert. J.R. (2006)
Conformational
flexibility of mammalian cytochrome P450 2B4 in binding imidazole
inhibitors with different ring chemistry and side chains.
J. Biol. Chem.
281(12), 8051-8061.
(98) Midoro-Horiuti, T., Schein, C.H., Mathura, V.,
Braun, W., Czerwinski, E.W., Togawa, A., Kondo, Y., Oka, T., Watanabe,
M. and Goldblum, R.M. (2006)
Structural
basis for epitope sharing between group 1 allergens of cedar pollen.
Mol. Immunol.,
43(6), 509-518.
(97) Schein, C.H., Ivanciuc, O. and Braun, W. (2005)
Common
physical-chemical properties correlate with similar structure of the
IgE epitopes of peanut allergens.
J. Agric. Food Chem.,
53(22), 8752-8759.
(96) Schein, C.H., Zhou, B. and Braun, W. (2005)
Stereophysicochemical
variability plots highlight conserved antigenic areas in Flaviviruses.
Virol. J.,
2(1):40.
(95) von Messling, V., Oezguen, N., Zheng, Q.,
Vongpunsawad, S., Braun,
W. and Cattaneo. R. (2005)
Nearby
clusters of hemagglutinin residues sustain SLAM-dependent canine
distemper virus entry in peripheral blood mononuclear cells.
J. Virol.,
79, 5857-5862.
(94) Cummins, S.F., Schein, C.H., Xu, Y., Braun, W. and
Nagle, G.T.
(2005)
Molluscan
attractins, a family of water-borne protein pheromones with
interspecific attractiveness.
Peptides, 26,
121-129.
(93) Schein, C.H.,
Zhou, B., Oezguen, N., Mathura, V.S., and
Braun, W. (2005)
Molego-based
definition of the architecture and specificity of metal binding sites.
Proteins,
58, 200-210.
(92) Painter,
S.D., Cummins, S.F., Nichols, A.E., Akalal, D.B.G., Schein, C.H., Braun, W.,
Smith, J.S., Susswein, A.J., Levy, M., de Boer, P.A.C.M., ter Maat, A.,
Miller, M.W., Scanlan, C., Milberg, R.M., Sweedler, J.V. and Nagle, G.T. (2004)
Structural
and functional analysis of Aplysa attractins, a family of water-borne
protein phermones with interspecific attractiveness.
Proc. Natl. Acad. Sci. USA,
101, 6929-6933.
(91) Ivanciuc, O.,
Oezguen, N., Mathura, V.S.,
Schein, C.H., Xu, Y. and Braun, W. (2004)
Using
property based sequence motifs and 3D modeling to determine structure
and functional regions of proteins.
Curr. Med. Chem.,
11, 583-593.
(90) Izumi, T., Schein, C.H., Oezguen, N., Feng, Y. and
Braun, W.
(2004)
Effects
of backbone contacts 3' to the abasic site on the cleavage and the
product binding by human apurinic/apyrimidinic endonuclease (APE1).
Biochemistry, 43, 684-689.
(89) Vongpunsawad, S.,
Oezgun, N., Braun, W. and Cattaneo R. (2004)
Selectively
receptor-blind measles viruses: identification of residues
necessary for SLAM- or CD46-induced fusion and their localization on a
new hemagglutinin structural model.
J. Virol., 78, 302-313.
(88) Braun, W.
(2003)
Developing
computational tools for NMR: the early days of protein NMR.
Magn. Reson. Chem., 41,
S51-S55.
(87)
Midoro-Horiuti, T., Mathura,
V., Schein, C.H., Braun, W., Yu, S., Watanabe, M., Lee, J.C., Brooks,
E.G. and Goldblum, R. (2003)
Major
linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to
the pectate lyase catalytic site.
Mol. Immunol.,
40,
555-562.
(86) Mathura, V.S.,
Soman, K.V., Varma, T.K. and Braun, W. (2003)
A
multimeric model for murine anti-apoptotic protein Bcl-2 and structural
insights for its regulation by post-translational modification.
J. Mol. Model., 9,
298-303.
(85) Ivanciuc,
O., Mathura, V.,
Midoro-Horiuti, T., Braun, W., Goldblum, R. and Schein, C.H. (2003)
Detecting
potential IgE-reactive sites on food proteins using a sequence and
structure database, SDAP-Food.
J. Agr. Food Chem., 51,
4830-4837.
(84) Garimella,
R., Xu, Y., Schein, C.H., Rajarathnam, K., Painter, S.D., Nagle, G.T.
and Braun, W. (2003)
NMR
solution structure of attractin, a water-borne protein pheromone from
the mollusk Aplysia californica.
Biochemistry, 42,
9970-9979.
(83) Mathura, V.S.,
Schein, C.H. and Braun, W. (2003)
Identifying
property based sequence motifs in protein families and
superfamilies: application to DNase-1 related endonucleases.
Bioinformatics, 19,
1381-1390.
(82)
Ivanciuc, O., Schein, C.H. and Braun, W. (2003)
SDAP:
database and computational tools for allergenic proteins.
Nucleic Acids Res., 31,
359-362.
(81) Schein, C.H.,
Ozgun, N., Izumi, T. and Braun, W. (2002)
Total
sequence decomposition distinguishes functional modules, "molegos" in
apurinic/apyrimidinic endonucleases.
BMC Bioinformatics, 3:37.
(80) Ivanciuc,
O.I., Schein, C.H. and Braun, W. (2002)
Data
mining of sequences and 3D structures of allergenic proteins.
Bioinformatics, 18,
1358-1364.
(79) Murtazina,
D., Puchkaev, A.V., Schein, C.H., Oezguen, N., Braun, W., Nanavati, A.
and Pikuleva, I.A. (2002)
Membrane-protein
interactions contribute to efficient 27-hydroxylation of cholesterol by
mitochondrial cytochrome P450 27A1.
J. Biol. Chem., 277,
37582-37589.
(78) Hasan, R.J.,
Pawelczyk, E., Urvil, P.T., Venkatarajan, M.S., Goluszko, P., Kur, J.,
Selvarangan, R., Nowicki, S., Braun, W.A. and Nowicki, B.J. (2002)
Structure-function
analysis of decay-accelerating factor: identification of residues
important for binding of the escherichia coli Dr adhesin and complement
regulation.
Infect. Immun., 70,
4485-4493.
(77) Oezguen, N.,
Adamian, L., Xu, Y., Rajarathnam, K. and Braun, W. (2002)
Automated
assignment and 3D structure calculations using combinations of 2D
homonuclear and 3D heteronuclear NOESY spectra.
J. Biomol. NMR, 22,
249-263.
(76)
Venkatarajan, M.S. and Braun, W. (2001)
New
quantitative descriptors of amino acids based on multidimensional
scaling of a large number of physical-chemical properties.
J. Mol. Model., 7,
445-453.
(75) Soman, K.V.,
Schein, C.H., Zhu, H. and Braun, W. (2001)
Homology
modeling and simulations of nuclease structures.
Methods Mol. Biol., 160,
263-286.
(74) Williams RM, Obradovi Z, Mathura V, Braun W,
Garner EC, Young J, Takayama S, Brown CJ, Dunker AK. (2001)
The
protein non-folding problem: amino acid determinants of intrinsic order
and disorder.
Pac. Symp. Biocomput.,
89-100.
(73) Soman, K. V. and W.Braun (2001).
Determining
the 3-D fold of a protein from approximate constraints: a simulation
study.
Cell Biochem. Biophys., 34,
283-304.
(72) Schein, C.H., Nagle, G.T., Page, J. Sweedler,
J.V., Xu, Y.,
Painter, S.D. and Braun, W. (2001)
Aplysia
attractin: biophysical characterization and modeling of a water-borne
pheromone.
Biophys. J., 81, 463-472.
(71) Xu, Y., Jablonsky, M. J., Jackson, P. L., Braun,
W. and Krishna,
N. R. (2001)
Automatic
assignment of NOESY cross peaks and determination of the protein
structure of a New World scorpion neurotoxin using NOAH/DIAMOD.
J. Magn. Reson.,
148, 35-46.
(70) Soman, K.V., Schein, C.H., Zhu, H. and
Braun, W. (2001)
Homology
modeling and simulations of nuclease structures.
In Nuclease Methods and Protocols, Schein, C.H. (ed) for series Methods
in Molecular Biology
Vol. 160, 2001, Humana Press, Totowa, N.J., pp. 263-286.
(69) Midoro-Horiuti, T M. Goldblum, R M. Schein, C H.
Soman, K V.
Braun, W. Kurosky, A. Brooks, E G. (2000)
Structural
Analysis of Jun a 3, a Potentially Inducible Allergen of Mountain Cedar
Pollen.
J. Allergy Clin. Immun., 105
(1): 965 Part 2 Suppl. S.
(68) Zhu, H., Schein, C., and W.Braun (2000).
MASIA:
recognition of common patterns and properties in multiple aligned
protein sequences.
Bioinformatics, 16,
950-951.
(67) Soman, K.V., Midoro-Horiuti, T., Ferreon, J.C.,
Goldblum, R.M.,
Brooks, E.G., Kurosky,
A., Braun, W. and Schein, C.H. (2000).
Homology
modeling and characterization of Ig E binding epitopes of mountain
cedar allergen Jun a 3.
Biophys. J., 79,
1601-1609.
(66) Zhu, H., Schein, C.H. and Braun, W. (1999)
Homology
modeling and molecular dynamics simulations of PBCV-1 glycosylase
complexed with UV-damaged DNA .
J. Mol. Model, 5,
302-316.
(65) Xu, Y., Wu, J., Gorenstein, D. and Braun, W. (1999)
Automated
2D NOESY assignment and structure calculation of crambin(S22/I25) with
the self-correcting distance geometry based NOAH/DIAMOD programs.
J. Magn. Reson., 136,
76-85.
(64) Xu, Y., Schein, Ch. and Braun, W. (1999)
Combined
automated assignment of NOESY spectra and three-dimensional structure
calculation of proteins.
Biological Magnetic Resonance Vol. 17, pp 37-79
(L.J. Berliner & N. Rama Krishna, eds) Kluwer Academic/Plenum
Publishing Corporation, New York, NY.
(63) Zhu, H. and Braun, W. (1999)
Sequence
specificity, statistical potentials and 3D structure prediction with
self-correcting distance geometry calculations of beta-sheet formation
in proteins.
Protein Science, 8,
326-342.
(62) Friesen, R.H.E., Castellani, R.J., Lee, J.C. and
Braun, W. (1998)
Allostery
in rabbit pyruvate kinase: development of a strategy to elucidate the
mechanism.
Biochemistry, 37,
15266-15276.
(61) Fraczkiewicz, R. and Braun, W. (1998)
Exact
and efficient analytical calculation of the accessible surface areas
and their gradients for macromolecules.
J. Comp. Chem., 19,
319-333.
(60) Buchholz, C.J., Koller, D., Devaux, P.,
Mumenthaler, Ch.,
Schneider-Schaulis, J., Braun, W., Gerlier, D., and Cattaneo, R. (1997)
Mapping
of the primary binding site of measles virus to its receptor CD46.
J. Biol. Chem., 272,
22072-22079.
(59) Mumenthaler, Ch., Güntert, P., Braun, W. and
Wüthrich,
K. (1997)
Automated
combined assignment of NOESY spectra and three-dimensional protein
structure determination.
J. Biomol. NMR, 10,
351-362.
(58) Mumenthaler, Ch., Schneider, U., Buchholz, Ch. J.,
Koller, D., Braun, W. and Cattaneo, R. (1997 )
A
3D model for the measles virus receptor CD46 based on homology
modeling, Monte Carlo simulations and hemagglutinin binding studies.
Protein Sci., 6,
588-597.
(57) Braun, W. (1997)
In "Computer
Simulations of Biomolecular Systems"
Vol.3. Chapter "Incorporation of Solvation Energy Contributions for
energy refinement
and folding of proteins". pp. 270-283. (W. F. van Gunsteren, P. K.
Weiner
and A.J. Wilkinson Eds) KLUWER/ESCOM, Dordrecht, The Netherlands.
(56) Mumenthaler, Ch. and Braun, W. (1995)
Automated
assignment of simulated and experimental NOESY spectra of proteins by
feedback filtering and self-correcting distance geometry.
J. Mol. Biol., 254,
465-480.
(55) Mumenthaler, Ch. and Braun, W. (1995)
Folding
of globular proteins by energy minimization and Monte Carlo simulations
with hydrophobic surface area potentials.
J. Mol. Modeling, 1,
1-10.
(54) Mumenthaler, Ch. and Braun, W. (1995)
Predicting
the helix packing of globular proteins by self-correcting distance
geometry.
Protein Science, 4,
863-871.
(53) Braun, W., Kallen, J., Mikol, V., Walkinshaw, M.D.
and Wüthrich, K. (1995)
Three
dimensional structure and action of immunosuppressants and their
immunophilins.
FASEB Journal, 9,
63-72.
(52) Braun, W. and Mumenthaler, Ch. (1994)
Predicting
three-dimensional
protein structures by distance geometry and Monte
Carlo
simulations: What can we
expect from parallel computers?
Proceedings 6th Joint EPS-APS International Conference on Physics
Computing, Lugano, CH, Aug.22-Aug.26, 1994.
(51) Altschuh, D., Braun, W., Kallen, J., Mikol, V.,
Spitzfaden, C., Thierry, J.C., Vix, O., Walkinshaw, M.D. and
Wüthrich, K. (1994)
Conformational
polymorphism of cyclosporin A.
Structure, 2,
963-972.
(50) Spitzfaden, C., Braun, W., Wider, G., Widmer, H.
and Wüthrich, K. (1994)
Determination
of the NMR solution structure of the Cyclophilin-Cyclosporin A complex.
J. Biomol. NMR, 4,
463-482.
(49) Hänggi, G. and Braun, W. (1994)
Pattern
recognition and self-correcting distance geometry calculations applied
to myohemerythrin.
FEBS Letters, 344,
147-153.
(48) von Freyberg, B., Richmond, T.J. and Braun, W.
(1993)
Surface
area included in energy refinement of proteins: A comparative study on
atomic solvation parameters.
J. Mol. Biol., 233,
275-292.
(47) Widmer, H., Widmer, A. and Braun, W. (1993)
Extensive
distance geometry calculations with different NOE calibrations. New
criteria for structure selection applied to Sandostatin and BPTI.
J. Biomol. NMR, 3,
307-324.
(46) von Freyberg, B. and Braun, W. (1993)
Minimization
of empirical energy functions in proteins including hydrophobic surface
area effects.
J. Comp. Chem., 14,
510-521.
(45) Braun, W., Vasak, M., Robbins, A.H., Stout, C.D.,
Wagner, G., Kägi, J.H.R. and Wüthrich, K. (1992)
Comparison
of the NMR solution structure and the X-ray crystal structure of rat
metallothionein-2.
Proc. Natl. Acad. Sci,
USA 89, 10124-10128.
(44) Spitzfaden, C., Weber, H.P., Braun, W., Kallen,
J., Wider,G. Widmer, H., Walkinshaw, M.D. and Wüthrich, K. (1992)
Cyclosporin
A - cyclophilin complex: a model based on X-ray and NMR data.
FEBS Letters, 300,
291-300.
(43) Wüthrich, K., von Freyberg, B., Weber, C.,
Wider G., Traber R., Widmer, H. and Braun, W. (1991)
Receptor-Induced
Conformation Change of the Immuno-suppressant Cyclosporin- A.
Science, 254,
(5034), 953-954.
(42) Mertz, J.E., Güntert, P., Wüthrich, K.
and Braun, W. (1991)
Complete
relaxation matrix refinement of NMR structures of proteins using
analytically
calculated
dihedral angle derivatives of NOE intensities.
J. Biomol. NMR, 1,
257-269.
(41) Braun, W. (1991)
Distance
Geometry in
distance and
torsion angle space. Flexibility, convergence and sampling properties
Proc. IUPAB Satellite Meeting in Whistler, Canada: "Expanding Frontiers
in Polypeptide and Protein Structural
Research" (V. Renugopalakrishnan, P.R. Carey, S.G. Huang, A. Storer and
I.C.P. Smith ed) Escom, Leiden.
(40) Weber, Ch., Wider, G., von Freyberg, B., Traber,
R., Braun, W., Widmer, H. & Wüthrich, K. (1991)
The
NMR structure of cyclosporin A bound to cyclophilin in aqueous solution.
Biochemistry, 30,
6563-6574.
(39) von Freyberg, B. & Braun, W. (1991)
Efficient
search for all low energy conformations of polypeptides by Monte
Carlo methods.
J. Comp. Chem., 12,
1065-1076.
(38) Braun, W. (1991)
Distance
Geometry in
torsion angle
space: New developments and applications. In Computational aspects
of
the study of biological
macromolecules by NMR Proc.
NATO Workshop at Il Ciocco (Hoch J. ed), pp. 199-208, Plenum Press, New
York.
(37) Darbon, H., Weber, Ch. & Braun, W. (1991)
Two-dimensional
1H nuclear magnetic resonance study of AaH IT, an anti-insect toxin
from the scorpion Androctonus australis Hector. Sequential resonance
assignments and folding of the polypeptide chain.
Biochemistry, 30,
1836-1845.
(36) Güntert, P., Braun, W. & Wüthrich,
K. (1991)
Efficient
computation of three dimensional protein structures in solution from
NMR data using
the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA.
J. Mol. Biol., 217,
517-530.
(35) Senn, H., Loosli, H.R., Sanner, M. & Braun, W.
(1990)
Conformational
studies of cyclic peptide structures in solution from 1H-NMR data by
distance geometry calculation and restrained energy minimization.
Biopolymers, 29,
1387-1400.
(34) Billeter, M., Schaumann, Th., Braun,
W., & Wüthrich, K.
(1990)
Restrained
energy refinement with two different algorithms and force fields of the
structure of a-amylase
inhibitor Tendamistat determined by NMR in solution.
Biopolymers, 29,
695-706.
(33) Schaumann, Th., Braun, W. &
Wüthrich, K. (1990)
A
program, FANTOM, for energy refinement of Polypeptides and Proteins
using a Newton-Raphson Minimizer in the torsion angle space.
Biopolymers, 29,
679-694.
(32) Kobayashi, Y., Ohkubo, T., Kyogoku,
Y., Nishiuchi, Y., Sakakibara, S., Braun, W. & Go, N. (1989)
Solution
conformation of conotoxin GI determined by 1H nuclear magnetic
resonance spectroscopy
and
distance geometry calculations.
Biochemistry, 28,
4853-4861.
(31) Sanner, M., Widmer, A., Senn, H.
& Braun, W. (1989)
GEOM,
a new tool for molecular modelling based on distance geometry
calculations with NMR data.
J. Comp. Aided Molecular
Design, 3, 195-210.
(30) Billeter, M., Kline, A.D., Braun, W., Huber, R.
&
Wüthrich, K. (1989)
Comparison
of the high-resolution structures of the a-amylase inhibitor
Tendamistat determined by
NMR
in solution and by X-ray diffraction in single crystals.
J. Mol. Biol., 206,
677-687.
(29) Braun, W., Epp, O., Wüthrich, K. & Huber,
R. (1989)
Solution
of the Phase Problem in the X-ray Diffraction Method with the NMR
structure as initial model: Patterson search and refinement of the
a-Amylase Inhibitor Tendamistat.
J. Mol. Biol., 206,
669-676.
(28) Güntert, P., Braun, W., Billeter, M. &
Wüthrich, K.
(1989)
Automated
stereospecific 1H- NMR assignments and their impact on the precision of
protein structure determination in solution.
J. Amer. Chem. Soc., 111,
3997-4004.
(27) Kline, A.D., Braun, W. & Wüthrich, K.
(1988)
Determination
of the Complete Three- Dimensional Structure of the a-Amylase Inhibitor
Tendamistat
in
Aqueous Solution by Nuclear Magnetic Resonance and Distance Geometry.
J. Mol. Biol., 204,
675-724.
(26) Schultze, P., Wörgötter,
E., Braun, W., Wagner, G., Vasak, M., Kägi, J.H.R. &
Wüthrich, K. (1988)
The
Conformation of [Cd7]-metallothionein-2 from rat liver in aqueous
solution determined by nuclear magnetic resonance.
J. Mol. Biol., 203,
251-268.
(25) Steinmetz, W.E., Bougis, P., Rochat,
H., Redwine, O.D., Braun, W. & Wüthrich K. (1988)
1H
Nuclear magnetic resonance studies of the three-dimensional structure
of the cardiotoxin CTXIIb from Naja Mossambica in aqueous solution and
comparison with the crystal structures of homologous toxins.
Eur. J. Biochem., 172,
101-116.
(24) Arseniev, A., Schultze, P.,
Wörgötter, E., Braun, W., Wagner, G., Vasak, M., Kägi,
J.H.R. & Wüthrich, K. (1988)
Three-dimensional
structure of rabbit liver [Cd7]-metallothionein-2a in aqueous
solution determined by nuclear magnetic resonance.
J. Mol. Biol., 201,
637-657.
(23) Wagner, G., Frey, M.H., Neuhaus, D.,
Worgotter, E., Braun, W., Vasak, M., Kagi, J.H., Wuthrich, K. (1987)
Spatial
Structure of Rabbit Liver Metallothionein-2 in Solution by NMR.
Experientia Suppl., 52,
149-157.
(22) Braun, W. (1987)
Calculation
of Protein
Structures
from NMR Data.
In Lecture Notes in Physics 284 (Baeriswyl, D., Droz, M., Malaspinas,
A. & Martinoli, P., eds) pp. 32-50, Springer Verlag, New York.
(21) Braun, W. (1987)
Distance
Geometry and related methods for protein structure determination from
NMR data.
Quart. Rev. Biophysics ,19,
115-157.
(20) Wagner, G., Braun, W., Havel, T.F.,
Schaumann, T., Go, N. & Wüthrich, K. (1987)
Protein
structures in solution by nuclear magnetic resonance and distance
geometry: the polypeptide
fold
of the basic pancreatic trypsin inhibitor determined using two
different algorithms, DISGEO and DISMAN.
J. Mol. Biol., 196,
611-641.
(19) Braun, W. (1987)
Local
deformation studies of chain molecules. Differential conditions for
changes of dihedral angles.
Biopolymers, 26,
1691-1704.
(18) Kline, A.D., Braun, W. &
Wüthrich, K. (1986)
Studies
by 1H nuclear magnetic resonance and distance geometry of the solution
conformation
of the a-amylase inhibitor Tendamistat.
J. Mol. Biol., 189,
377-382.
(17) Braun, W., Wagner, G.,
Wörgötter, E., Vasak, M., Kägi, J.H.R. &
Wüthrich, K. (1986)
Polypeptide
fold in the two metal clusters of Metallothionein-2 by nuclear magnetic
resonance and distance geometry.
J. Mol. Biol., 187,125-129.
(16) Ohkubo, T., Kobayashi, Y.,
Shimonishi, Y., Kyogoku, Y., Braun, W. & Go, N. (1986)
A
Conformational Study of Polypeptides in Solution by 1H-NMR and Distance
Geometry.
Biopolymers, 25
(S), 123-134.
(15) Kobayashi, Y., Ohkubo, T., Kyogoku,
Y., Nishiuchi, Y., Sakakibara, S., Braun, W. & Go, N. (1986)
Conformational
analysis of conotoxin GI determined by distance geometry.
Peptide Chemistry,
1986 (Miyazawa T. ed.) 127-130.
(14) Wagner, G., Frey, M.H., Neuhaus, D.,
Wörgötter, E., Braun, W., Vasak, M., Kägi, J.H.R. &
Wüthrich, K. (1985)
In
Proc. Second
International
Meeting on Metallothionein and Other Low Molecular Weight Metal-binding
Proteins.
(Zürich, 1985; Kägi J.H.R. & Kojima Y. ed.)
Birkhäuser Verlag, Basel.
(13) Braun, W. & Go, N. (1985)
Calculation
of protein conformations by proton-proton distance constraints. A new
efficient algorithm.
J. Mol. Biol., 186,
611-626.
(12) Wüthrich, K., Billeter, M. &
Braun, W. (1984)
Polypeptide
secondary structure determination by nuclear magnetic resonance
observation of short proton-proton distances.
J. Mol. Biol., 180,
715-740.
(11) Braun, W., Yoshioki, S. & Go, N.
(1984)
Formulation
of static and dynamic conformational energy analysis of biopolymer
systems consisting of two or more molecules.
J. Phys. Soc. Japan, 53,
3269-3275.
(10) Abe, H., Braun, W., Noguti, T. & Go, N. (1984)
Rapid
calculation of first and second derivatives of conformational energy
with respect to
dihedral
angles for proteins. General recurrent equations.
Computers &
Chemistry, 8, 239-247.
(9) Wüthrich, K., Billeter, M. &
Braun, W. (1983)
Pseudo-structures
for the 20 common amino acids for use in studies of protein
conformations by measurements of intramolecular proton- proton distance
constraints with nuclear magnetic resonance.
J. Mol. Biol., 169,
949-961.
(8) Braun, W., Wider, G., Lee, K.H. &
Wüthrich, K. (1983)
Conformation
of glucagon in a lipid-water interphase by 1H nuclear magnetic
resonance.
J. Mol. Biol., 169,
921-948.
(7) Braun, W. (1983)
Representation
of short and long-range handedness in protein structures by signed
distance maps.
J. Mol. Biol., 163,
613-621.
(6) Brown, L.R., Braun, W., Anil Kumar &
Wüthrich, K. (1982)
High
resolution nuclear magnetic resonance studies of the conformation and
orientation of melittin bound to a lipid- water interface.
Biophys. J., 37,
319-328.
(5) Billeter, M., Braun, W. & Wüthrich, K.
(1982)
Sequential
resonance assignments in protein 1H nuclear magnetic resonance spectra.
Computation of sterically
allowed proton-proton distances and statistical analysis of
proton-proton distances in single crystal protein conformations.
J. Mol. Biol., 155,
321-346.
(4) Wüthrich, K., Wider, G., Wagner,
G. & Braun, W. (1982)
Sequential
resonance assignments as a basis for determination of spatial protein
structures
by
high resolution proton nuclear magnetic resonance.
J. Mol. Biol., 155,
311-319.
(3) Braun, W., Bösch, C., Brown,
L.R., Go, N. & Wüthrich,
K. (1981)
Combined
use of proton- proton Overhauser enhancements and a distance geometry
algorithm
for
determination of polypeptide conformations. Application to
micelle-bound glucagon.
Biochim. Biophys. Acta, 667,
377-396.
(2) Wüthrich, K., Wagner, G.,
Richarz, R. & Braun, W. (1980)
Correlation
between internal mobility and stability of globular proteins.
Biophys. J., 32,
549-560.
(1) Braun, W. & Hepp, K. (1977)
The
Vlasov dynamics and its fluctuations in the 1/N limit of interacting
classical particles.
Commun. Math. Phys., 56,
101-113.
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