|
Recent Computational Biology Group Presentations
Indicates
poster/presentation received an award
| 2012 - Maleki, S.J., Cheng, H. and Schein,C.H. Cross-Reactivity Among Peanuts and Tree Nuts. Proceedings of the 41st United States - Japan National Resource Panel (p. 1-2), New Orleans, LA (December 8-13). |
||
| - Schein, C.H.
From
Interferons to Allergens: Computational Analysis for Novel Therapies,
National Institute of General Medical Sciences Internal Seminar,
National Institutes of Health, Bethesda, MD (September 24). |
||
| - Schein, C.H.
Targeting
Toxins, the Lethal Drones of Bacteria, Biology Departmental Seminar,
Texas Women's University, Denton, TX
(September 14). |
||
| - Schein, C.H.
What Makes
You Sneeze? Motifs of Allergenic Proteins, Collaborative Research
Alliances for the Cure of Lung Diseases, Rice University, Houston, TX
(June 21). |
||
| - Negi, S.S.,
Haddow, A.D.,
Sherman, M.B.,
Weaver, S.C. and Braun, W. Structural Studies on the Envelope
Proteins E1 and E2 of Everglades Virus, 17th Annual Sealy Center for
Structural Biology & Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (April 27). |
||
| - Lu, W., Schein,
C.H. and Braun, W. Physico-Chemical Property (PCP) Motifs to
Identify Proteins that Could be Cross-Reactive With Known Peanut
Allergens, 17th Annual Sealy Center for Structural Biology &
Molecular Biophysics Symposium, Hotel Galvez, Galveston, TX (April 27). |
||
| - Schein, C.H.,
Teuber, S.S. and Maleki, S.J. Repeated Sequences in Nut Allergens
Mediate Cross Reactivity Between Tree Nuts and Peanuts, 17th Annual
Sealy Center for Structural Biology & Molecular Biophysics
Symposium, Hotel Galvez, Galveston, TX (April 27). |
||
| - Dyer, K., Chang,
J.T.,
Schmid, M.F., Rixon, F.J., Myers, C.C., Feng,
J., Wong, K., Ambia-Garrido, J., Vainrub, A., Chen, C.,
Krause, K., Power, T.D., Chen, D., Ivanciuc, O., Negi,
S.S., Chiu, W., Sowers, L.C., Schein, C.H., Braun, W. and Pettitt,
B.M. Unlocking the Relationships Between
Macromolecular Sequence, Structure and Function to Understand and Treat
Diseases: Scientific Computing Research Laboratory, The University Core
Development Committee & Institute for Translational Research:
Research Resource Day, University of Texas Medical Branch, Galveston,
TX (March 16). |
||
2011 - Schein, C.H., Langford, T.D., Chen, D. and Oberhauser, A. Controlling the Size of ABeta Aggregates Reduces Toxicity to Cultured Cells, 15th Annual Forum on Aging Poster Session, University of Texas Medical Branch, Galveston, TX (November 17). |
||
| - Schein C.H.
Designing
Novel Inhibitors of Toxins, the Lethal Drones of Bacteria, Department
of Biochemistry & Molecular Biology Seminar, University of Texas
Medical Branch, Galveston, TX (November 10). |
||
| - Schein C.H.
Physicochemical Property Consensus Sequences for Functional Analysis,
Design of Multivalent Vaccines, and Targeted Antivirals, 8th Annual
Biotechnology and Bioinformatics Symposium (BIOT-2011), Rice
University, Houston, TX (October 21). |
||
| - Negi, S.S.,
Navaratnarajah,
C.K., Apte, S., Cattaneo, R. and Braun, W. Prediction and
Analysis of Interacting Residues on Measles Virus Fusion Protein,
Measles Virus Symposium, Mayo Clinic Rochester, MN (July 15). |
||
| - Schein, C.H.
From Anthrax
to Polio: Computational and Structural Design of Novel Inhibitors of
Bacterial Toxins and Antivirals, Universiteit Leiden, Leiden Institute
of Chemistry, BioSyn Lecture, RA Leiden, Nederlands (June 24). |
||
| |
- Schein, C.H.
Novel
Approach to Designing Flavivirus Vaccines, 2011 UTMB Immunology
Research in Progress, University of Texas Medical Branch, Galveston,
TX (April 13). |
|
| - Lu, W.,
Oberhauser, A.F. and Braun, W. Engineering Novel Proteins With
Enhanced Mechanical Strength, 16th Annual Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Bowen, D., Lewis,
J., Beasley, D. and Schein, C.H. A
PCP-Consensus
Dengue Envelope Domain III Protein Generates a Multivalent Antibody
Response, 16th Annual Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Negi, S.S.,
Sherman, M.B., Weaver, S.C. and Braun, W. Structural Studies of
Western Equine Encephalitis Virus for Vaccine Design, 16th Annual
Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Chen, D., Oezguen,
N., Acharya,
V., Ali, K., Choudhury, A., Urvil, P., Braun, W.,
Pothoulakis, C., Savidge, T. and Schein, C.H. Mechanism of
Inositolphosphate-Mediated Allosteric Activation of the Clostridium
Difficile Toxins, 16th Annual Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Ivanciuc, O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M. and Braun, W.
Prediction of the Peptide Cross-Reactivity With the Mountain Cedar
Allergen Jun a 1, 16th Annual Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Power, T.D.,
Oezguen, N., Negi, S.S. and Braun, W. A Structural Comparison of
a 3D- Model of the Peanut Allergen Ara h 2 and the Recently Released
X-ray Crystal Structure, 16th Annual Structural Biology Symposium,
Hotel Galvez, Galveston, TX (April 8). |
||
| - Bowen, D.M.,
Lewis, J.A.,
Beasley, D.W.M. and Schein, C.H. Immunogenicity of a
PCP-Consensus Dengue Envelope Domain III Protein Representing All Four
Types, 2011
Annual Institute for Human Infections and Immunity/McLaughlin
Colloquium, University of Texas Medical Branch, Galveston, TX
(March 25). |
||
| - Lu, W.,
Oberhauser, A.F. and Braun, W. Engineering Novel Proteins with
Enhanced Mechanical Strength, 55th Biophysical Society Annual Meeting,
Baltimore, MD (March 6). |
||
| - Braun, W.
Detection and
Prediction of IgE Epitopes in Allergens, G. Malcolm Trout Visiting
Scholar Program, Michigan State University, East Lansing, MI
(March 2). |
||
| - Negi, S.S.,
Sherman, M.B.,
Weaver, S.C. and Braun, W. Structural Studies on the Envelope
Proteins E1 and E2 of Western Equine Encephalitis Virus, Symposium on
Structural Biology and Infectious Disease, University of Texas Medical
Branch, Galveston, TX (February 11). |
||
2010 - Braun, W. The Structural Biology of Allergens. Oesper Symposium 2010 honoring Kurt Wuethrich (Nobel Prize 2002 in Chemistry), University of Cincinnati, Cincinnati, OH (October 8). |
||
| - Schein, C.H.
New
Approaches to Therapies for Protein Aggregation Diseases.
Mitchell Center for Neurodegenerative Diseases, 2010 Seminar Series,
University of Texas Medical
Branch, Galveston, TX (September 20). |
||
 |
- Han, W., Ivanciuc,
O., Oezguen,
N. and Braun,W. Development of an Automated Process for Homology
Based Prediction of Protein 3D Structure. 2010 Medical Student
Summer Research Program Poster Session, University of Texas Medical
Branch, Galveston, TX (June 24). |
|
| - Schein, C.H., Chen, D.,
Martin, Z.S.,
Bruce, N.J., Soto, C. and Bryce, R.A. Novel inhibitors of Amyloid
Aggregation: Computational and Spectral Analysis of their Mode of
Activity. 239th American Chemical Society National Meeting, San
Francisco, CA (March 25). |
||
| - Schein, C.H., Maleki, S.
and Teuber,
S. Using Physicochemical-Property Similarity to Define Common
IgE-Epitopes in Peanut and Walnut Allergens. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Chen, D., Ma, L.,
Kanalas, J., Gao, J., Sower, L., Walter, M.A, Peterson, J.W.,
Gilbertson, S.R. and Schein, C.H. Structure-Based Redesign of An
Adenylyl-Cyclase Toxin Inhibitor. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| |
- Negi, S.S., Oezguen, N.
and Braun, W. Prediction of Allergen Cross-Reactivity Using
Structural Bioinformatics Methods. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
|
| - Esadze, A., Ivanciuc, O.
and Braun, W. Comparative Study of IgE Epitopes and Sequence
Conservation in the Melon Allergen Cuc m 2. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Ivanciuc, O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M. and Braun, W.
Machine Learning for Peptide Cross-Reactivity With the Mountain Cedar
Allergen Jun a 1. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Oezguen, N., Mantha,
A.K., Mitra, S. and Braun, W. Additional Evidence for the “Moving
Ion” Mechanism in Endonuclease Function of APE1/Ref-1. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Power, T.D., Negi, S.S.,
Ivanciuc, O. and Braun, W. Analysis of Surface and Interface
Residues Involved in Antibody/Antigen Complexes. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Lu, W. and Braun,
W. A New Method to Evaluate and Combine 3D Templates for Homology
Modeling. 15th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, Hotel Galvez,
Galveston, TX (March 19). |
||
| - Schein, C.H., Maleki,
S.J. and Teuber, S. Identifying Similar IgE-epitopes in Peanut
and Walnut Allergens. American Academy of Allergy, Asthma &
Immunology 2010 Annual Meeting, New Orleans, LA (February 26 - March 2). |
||
| - Schein, C.H., Chen, D.,
Martin, Z.S.,
Bruce, N.J., Soto, C. and Bryce, R.A. Computational Design of
Inhibitors of Amyloid-β Aggregation for
Alzheimer's Treatment. Keystone Symposium on "Alzheimer's Disease
Beyond Aβ", Copper
Mountain Resort, Copper Mountain, CO (January 13). |
||
| - Braun, W. Allergen
Structures
in a Genomics Age. Keystone Symposium on "Structural Genomics:
Expanding the Horizons of Structural Biology", Beaver Run Resort,
Breckenridge, CO (January 10). |
||
2009 - Chen, D., Bruce, N.J., Ghosh Dastidar, S., Bryce, R.A. and Schein, C.H. Molecular Dynamics Studies of Interactions Between Aggregation Inhibitors and β-Amyloid Fibrils. UTMB Sealy Center on Aging in conjunction with Research Services 13th Annual Forum on Aging, University of Texas Medical Branch, Galveston, TX (November 12). |
||
| - Power, T.D., Negi, S.S.,
Ivanciuc, O.
and Braun, W. Analysis of
Surface and Interface Residues Involved in Antibody/Antigen
Complexes. Keck Center 19th Annual Research Conference, MD
Anderson Cancer
Prevention Building, Texas Medical Center, Houston, TX (October 29-30). |
||
| - Chen, D., Bruce, N.J.,
Ghosh
Dastidar, S., Bryce, R.A. and Schein, C.H. Molecular Dynamics
Studies of Interactions Between Aggregation Inhibitors and
β-Amyloid
Fibrils. Keck Center 19th Annual Research Conference, MD Anderson
Cancer Prevention Building, Texas Medical Center, Houston, TX (October
29-30). |
||
| - Oezguen, N., Mantha,
A.K., Mitra, S. and Braun, W. Additional Evidence for the "Moving
Ion" Mechanism in Endonuclease Function of APE1/Ref-1. Keck
Center 19th Annual Research Conference, MD Anderson Cancer
Prevention Building, Texas Medical Center, Houston, TX (October 29-30). |
||
| - Negi, S.S., Tiwari, R.,
Midoro-Horiuti, T., Goldblum, R.M. and Braun, W. EpiSearch: A New
Method for Mapping Conformational Epitopes using Peptide Mimetics from
Phage Display Libraries. Keck Center 19th Annual Research
Conference, MD Anderson Cancer
Prevention Building, Texas Medical Center, Houston, TX (October 29-30). |
||
| - Lu, W., Oezguen, N. and
Braun, W. Homology Modeling by Template Combination. Keck
Center 19th Annual Research Conference, MD Anderson Cancer
Prevention Building, Texas Medical Center, Houston, TX (October 29-30). |
||
| - Ivanciuc, O.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M. and Braun, W.
Modeling Peptide Cross-Reactivity with the Mountain Cedar Pollen Jun a
1. Keck Center 19th Annual Research Conference, MD Anderson
Cancer
Prevention Building, Texas Medical Center, Houston, TX (October 29-30). |
||
| - Chen, D., Martin, Z.S.,
Soto, C. and
Schein,
C.H. Computer Aided Inhibitor Design for β-Amyloid Fibril
Formation. National Postdoctoral Appreciation Day, University
of Texas Medical Branch, Galveston,
TX (September 24). |
||
| - Chen, D., Martin, Z.S.,
Ghosh
Dastidar, S., Bruce, N., Marks, G.E., Soto, C., Bryce, R.A. and Schein,
C.H. Identifying Beta-sheet Breaker
Peptides
and Small Molecules that Reverse the Aggregation of β-Amyloid.
Third Annual Bazelides Research Symposium, University of Texas
School of Public Health, Houston,
TX (June 17). |
||
| - Schein, C.H.
Breaking Apart
Amyloid β-fibrils: MD Simulations with Bound Beta-sheet Breaker
Peptides
and Small Molecules. The Mitchell Center for Neurodegenerative
Diseases Seminar Series, University of Texas Medical Branch, Galveston,
TX (May 4). |
||
|
- Yingling, B.M., Prusak,
D.J.,
Danecek, P., Mason, P.W., Wood, T.G. and Schein, C.H. Expression
of West Nile Non-Structural Protein 2A in E. coli. North Carolina
Academy of Science 2009 Annual Meeting, Warren Wilson College,
Asheville, NC (April 4). |
|
| - Schein, C.H.
Defining IgE
Epitopes Involved in Allergen Cross Reactivity. 2009 UTMB
Immunology Research in Progress Seminar, The University of Texas
Medical Branch,
Galveston, TX (April 1). |
||
| - Lu, W., Danecek, P.
and Schein, C.H. Modeling and Analysis of Consensus Envelope
Proteins for Dengue Virus Highlight Subtype Specific Areas. 14th
Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Chen, D., Oezguen, N.,
Epstein, H.F.
and Braun, W. Refining 3D Protein Models By Sequence Alignment
and Template Combination. 14th Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Negi, S.S., Tiwari, R.,
Midoro-Horiuti, T., Goldblum, R.A. and Braun, W. EpiSearch: a New
Method for Mapping Conformational Epitopes Using Peptide Mimics From
Phage Display Libraries. 14th Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Chattopadhyay, A.,
Ivanciuc, O.,
Negi, S.S.
and Braun, W. Computational Analysis of Allergenic Determinants
for the Peanut Allergen Ara h 3. 14th Annual Sealy Center for
Structural Biology
and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Oezguen, N., Petri, U.,
Savidge, T.
and Braun, W. β-Flap Movement of the RTX Toxin Cystein
Protease Domain. 14th Annual Sealy Center for Structural Biology
and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Chen, D. and Schein,
C.H.
Molecular Dynamics Simulations for Reversing the Aggregation of Amyloid
β-Fibrils. 14th Annual Sealy Center for Structural Biology and
Molecular Biophysics Symposium, The University of Texas Medical Branch,
Galveston, TX (March 27). |
||
| - Oezguen, N., Mantha,
A.K., Izumi, T., Bhakat, K.K., Mitra, S. and Braun, W. Does the
APE1 Double Mutant E96Q, D210N Bind Mg2+ in the Active Site. 3rd
US-EU Conference: Repair of Endogenous Genome Damage, Moody Gardens
Hotel, Galveston, TX (February 21-25). |
||
2008 - Chen, D., Martin, Z.S., Kayed, R., Soto, C. and Schein, C.H. Computational Selection of Inhibitors of Aβ Aggregation. 12th Annual Forum on Aging , The University of Texas Medical Branch, Galveston, TX (November 19). |
||
| - Schein, C.H.
Flavitrack
Analysis of the Structure and Function of West Nile Non-Structural
Proteins. Biotechnology and Bioinformatics Symposium (Biot-2008),
The University of Texas at Arlington, Arlington, TX (October 17). |
||
| - Schein, C.H.
Common Allergenic Epitopes in Nut Proteins Contribute to Cross
Reactivity. ILSI Health and
Environmental Sciences Institute (HESI) Food Allergy Workshop, The
Beacon Hotel and Corporate Quarters, Washington, DC (October 15). |
||
| - Chen, D., Martin, Z.S.,
Kayed, R., Soto, C. and Schein, C.H. Computational Selection of
Inhibitors of AΒ Agregation. The 18th Keck Center Annual Research
Conference, UT M.D. Anderson Cancer Prevention Building, Texas Medical
Center, Houston, TX (October 3). |
||
| - Schein, C.H.
Computational Design of Inhibitors of Bacterial Toxins. 64th
Southwest Regional American Chemical Society Meeting, The Peabody
Little Rock Hotel, Little Rock AK (October 1). |
||
| - Martin-Jones, Z.S.,
Chen, D., Gilbertson, S.R., Schein, C.H., Kayed, R. & Soto,
C. Beta-sheet breaker and small molecule inhibitors or amyloids
in Alzheimer's disease. American Neurological Association
(ANA) 133rd Annual Meeting, Salt Lake City, UT (September 21-24). |
||
| - Yingling, B.M., Prusak,
D.J.,
Danecek, P., Mason, P.W., Wood, T.G. and Schein, C.H. Expression
of West Nile Non-Structural Protein 2A in E. coli. 2008 Summer
Undergraduate Research Program Poster Session,
University of Texas Medical Branch, Galveston, TX (August 8). |
||
| - Mantha, A., Bhakat,
K.K., Oezguen,
N., Izumi, T., Braun, W. and Mitra, S. Exploring Potential Link
Between Seven Cys Residues of HAPE1'S Repair and Redox Functions: a
Multi Functional DNA Repair Enzyme. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Danecek, P. and Schein,
C.H.
Flavitrack, a Database to Determine Functional and Immunologically
Important Regions of Flavivirus Sequences. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Schein, C.H., Ivanciuc,
O., Midoro-Horiuti, T., Xie, L., Hillman, G.R., Goldblum, R.M. and
Braun,W. Identification of Jun a 1 Cross-Reactive Peptides Using
Physico-Chemical Indices and Partial Least Squares. 13th
Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Oezguen, N., Mantha,
A.K., Bhakat, K.K., Izumi, T., Mitra, S. and Braun, W. Influence
of a Distant Ser Residue on the Active Site Over 16 Angstroms: Unusual
Affect of
C99S APE1 on Endonuclease Activity Or Repair Function. 13th
Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Negi, S., Tiwari, R.,
Midoro-Horiuti, T., Goldblum, R.M. and Braun, W. EpiSearch: a New
Method for Mapping Conformational Epitopes Using Peptide Mimics From
Phage Display Libraries. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Chen, D., Sower, L.,
Peterson, J.W. and Schein, C.H. Fragment Based Drug Design for
Cholera Therapy. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Power, T.D., Ivanciuc,
O. and Braun, W. Analysis of Surface and Interface Residues
Involved in Antibody/Antigen Complexes. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Ivanciuc, O., Power,
T.D., Gendel, S.M., Schein, C.H. and Braun, W. AllerML: Ontology
and Markup Language for Allergens and for Structural Biology Studies of
Allergenicity. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Anderson, K.,
Navaratnarajah, C., Cattaneo, R., Braun, W. and Oezguen, N. MD
Simulations of Measles Virus Hemagglutinin Y228A and N274A
Mutants. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Ma, L., Xu, M., Garcia,
T. and Oberhauser, A.F. The Effects of Pathogenic Mutations on
Polycystin-1 Domain Nano-Mechanics. 13th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 16-17). |
||
| - Danecek, P. and Schein,
C.H.
Flavitrack, a Database to Determine Functional and Immunologically
Important Regions of Flavivirus Sequences. Global Health Poster
Symposium, The Global Health Concentration, The University of Texas,
School of Public Health, Houston, TX (April 9). |
||
2007 - Braun, W. Structural (3-D) Comparisons of Novel Proteins to Known Allergens. Protein Allergenicity Technical Committee New Methods Workshop, ILSI Health and Environmental Sciences Institute (HESI), Hotel Palais de la Mediterranee, Nice, France (October 24). |
||
|
- Martin-Jones, Z.S.,
Chen, D.,
Gilbertson, S.R., Schein, C.H. and Soto, C. Beta-Sheet Breaker
and Small
Molecule Inhibitors of Amyloids in Alzheimer's Disease. UTMB
Sealy Center on Aging in conjunction with Research Services 11th Annual
Forum on Aging, University of Texas Medical Branch, Galveston, TX
(October 3). |
|
| - Chen, D., Martin-Jones,
Z.S., Soto, C. and Schein, C.H. Pharmacophore Based Inhibitors of
Beta-amyloid Fibril Formation. UTMB Sealy Center on Aging in
conjunction with Research Services 11th Annual Forum on Aging,
University of Texas Medical Branch, Galveston, TX (October 3). |
||
| - Schein, C.H., Chen, D.,
Misra, M.,
Sower, L., Peterson, J.W. Computer Aided Design of Inhibitors of
Bacterial
Toxins. Department of Biochemistry and Molecular Biology Graduate
Student Orientation, University of Texas Medical Branch, Galveston, TX
(September 26). |
||
| - Schein, C.H.
Dealing with 21st
Century Viruses. Xerox Research Center, Rochester, NY (June 8). |
||
| - Midoro-Horiuti, T.,
Tiwari, R., Negi, S.S., Schein, C.H., Ning, B., Goldblum, R.M. and
Braun, W. Use of random peptide display and novel Bioinformatics
Algorithm to Detect Conformational Epitopes of jun a 1, the Major
Allergen of Mountain Cedar Pollen. The
Federation
of Clinical Immunology Societies (FOCIS) 2007, Sheraton San Diego Hotel
& Marina, San Diego, CA (June 7-11). |
||
| - Beasley, D.W.C., Zhang,
S., Bovshik, E.I., Maillard, R., Gromowski,
G.D., Volk, D.E., Schein, C.H., Huang, C.Y.-H., Gorenstein, D.G., Lee,
J.C. and Barrett, A.D.T. Critical Role of a Tyrosine Corner Motif
in
the Evelope Protein Receptor-Binding Domain of Mosquito-Borne
Flaviviruses. The Eighth International Symposium on
Positive-Strand
RNA Viruses, Mayflower Hotel in Washington DC (May 26 - 30). |
||
| - Garcia, T., Braun, W.
and Oberhauser, A.F. Molecular Insights into the Mechanical
Properties of Titin I-Band Domains. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Ma, L., Garcia, T.,
Wang, J., and Oberhauser, A.F. The Nanomechanics of the REJ
Region of Polycystin-1. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Negi, S.S. and Braun,
W. Mapping Conformational Epitopes on Protein Surfaces Using
Phage Display Libraries. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Bilikallahalli, M.,
Negi, S.S., Braun, W. and Halpert, J.R. Dissecting the
Thermodynamics and Cooperativity of Ligand Binding in Cytochrome
P450eryF: Implications to Drug-Drug Interactions in Humans. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Power, T.D., Ivanciuc,
O.I., Negi, S.S. and Braun, W. Analysis of Surface and Interface
Residue Properties Involved in Antibody/Antigen Complexes. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Ivanciuc, O.I.,
Midoro-Horiuti, T., Schein, C.H., Goldblum, R.M. and Braun, W.
Application of the Property Distance Index PD for the Computer-Aided
Design of IgE Binding Peptides for the Allergen Jun a 1. 12th
Annual Sealy
Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 18 - 19). |
||
| - Tiwari, R., Ning, B.,
Negi,
S.S., Endsley, M., Estes, D., Schein, C.H., Braun, W., Midoro-Horiuti,
T. and Goldblum, R. Mapping Conformational Epitopes on Jun a 1,
the Major Allergen of Mountain Cedar Pollen. 12th Annual Sealy
Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 18 - 19). |
||
| - Chen, D., Misra, M.,
Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. and Schein,
C.H. Pharmacophore Based Selection and Scoring of Inhibitors of
Bacterial Toxins. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Oezguen, N., Zhou, B.,
Negi, S.S., Ivanciuc, O.I. and Braun, W. Homology Modeling of
Allergenic Proteins and Surface Analysis of Known Epitopes. 12th
Annual Sealy Center for Structural Biology and Molecular Biophysics
Symposium, University of Texas Medical Branch, Galveston, TX (May 18 -
19). |
||
| - Ghosh Dastidar, S.,
Chen, D., Marks, G.E., Bryce, R.A. and Schein, C.H. Molecular
Dynamics Simulations of the Interaction of Amyloid β-Fibrils With
Peptides that Inhibit Aggregation. 12th Annual Sealy Center for
Structural Biology and Molecular Biophysics Symposium, University of
Texas Medical Branch, Galveston, TX
(May 18 - 19). |
||
| - Garcia, T., Braun, W.
and Oberhauser,
A.F. Molecular Insights into the Mechanical Properties of Titin
I-Band Domains. 15th Texas Protein Folder's Meeting, Camp Allen,
TX (March 30 - April 1). |
||
| - Garcia, T., Braun, W.
and Oberhauser, A.F. Molecular Insights into the Mechanical
Properties of Titin I-Band Domains. 51st Annual Biophysical
Society Meeting, Baltimore, MD (March 2 - 7). |
||
| - Schein, C.H., Chen, D.,
Misra, M.,
Sower, L., Peterson, J.W. Computer Aided Design of Bacterial
Toxins. 5th Annual American Society for Microbiology (ASM)
Biodefense and Emerging Diseases Research Meeting, The Renaissance
Hotel, Washington, DC. (February 27 - March 2). |
||
| - Schein, C.H.
Identifying Inhibitors of Bacterial Toxins by Compound Library
Screening. Pharmacology and Toxicology Seminar Series, University
of Texas Medical Branch, Galveston, TX. (February 9). |
||
2006 - Schein, C.H., Chen, D., Misra, M., Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. Non-Nucleotide Inhibitors of Anthrax Edema Factor Identified by an ab initio Screening Method. 2006 Texas Branch Meeting of The American Society for Microbiology, The University of Texas Medical Branch, Galveston, TX (November 16-18). |
||
| - Misra, M., Tran,
V., Zhang, M.
and Schein, C.H. Flavitrack, an Annotated Database to Compare
Flavivirus Sequences. The Changing Landscape of Vaccine
Development - Vaccines for Global Health, Moody Gardens Hotel,
Galveston, TX
(November 8-10). |
||
| - Schein, C.H., Chen, D.,
Misra, M.,
Bryce, R.A., Marks, G.E., Kellogg,
G.E., Soto, C. and Peterson, J.W. The Eyes Have It!: Using
Positional
Information to Select Inhibitors. Southwest Regional A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX
(October 18-22). |
||
| - Chen, D., Marks, G.E.,
Bryce, R.A., Soto, C. and Schein, C.H.
Binding Modes for Inhibitors of β-amyloid Fibril Formation. Southwest
Regional A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX (October 18-22). |
||
| - Chen,
D., Misra,
M., Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. Southwest Regional A.C.S. Meeting,
2006, Westchase Marriott Hotel, Houston, TX (October 18-22). |
||
| - Garcia,
T.I., Oberhauser, A.F. and Braun, W. Molecular Insights into the
Mechanical Properties of Titin I-band Domains. The 16th Keck Annual
Research Conference "Extraction and Integration of Data in Biosystems",
Houston, TX (October 13). |
||
| - Estrella-Jimeneza,
M.E., Gilbertson, S.R., Monk, K.A., Peterson, J.W., Sower, L.,
Bush, K.L., Pawlick, J.E., Moen, S.T., Torres, A.G., Schein, C.H.,
Chen, D., Misra, M. and Power, T.D. Synthesis of Small Molecules
Inhibitors of Edema Factor. The 16th Keck Annual
Research Conference "Extraction and Integration of Data in Biosystems",
Houston, TX (October 13). |
||
| - Chen,
D.*, Marks, G.E., Bryce, R.A., Soto, C. and Schein, C.H. Binding
Modes for Inhibitors of Beta-amyloid Fibril Formation. The 16th Keck
Annual Research
Conference "Extraction and Integration of Data in Biosystems", Houston,
TX (October 13). |
||
| - Chen,
D., Misra,
M.*, Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. The 16th Keck Annual Research
Conference "Extraction and Integration of Data in Biosystems", Houston,
TX (October 13). |
||
| - Misra,
M., Tran, V., Zhang, M. and Schein, C.H.* Flavitrack, an
Annotated
Database to Compare Complete Flavivirus Sequences. The 16th Keck Annual
Research Conference "Extraction and Integration of Data in Biosystems",
Houston, TX (October 13). |
||
| - Chen,
D., Misra,
M., Sower, L., Menche, G., Peterson, J.W., Kellogg, G.E. and Schein,
C.H. Screening for Non-Nucleotide Based Inhibitors of Anthrax
Edema
Factor Using Molecular Docking. UTMB Sealy Center on Aging in
conjunction with Research Services 10th Annual Forum on Aging,
University of Texas Medical Branch, Galveston, TX (October 4). |
||
| - Zhang, M., Misra, M. and
Schein, C.H. Following Virulence Evolution by Assigning License
Plates to Flaviviruses. High School Summer Research
Program Poster Session, University of Texas Medical Branch, Galveston,
TX (July 28). |
||
| - Guevara, E. and Schein,
C.H. The Need to Design a Vaccine Against Dengue Virus
(Flavivirus Family). High School Summer Research Program Poster
Session,
University of Texas Medical Branch, Galveston, TX (July 28). |
||
|
- Tran, V., Misra, M. and
Schein, C.H. Identifying Functional 3-D Motifs with a Database of
Flavivirus Mutations. Medical Student Summer Research Program (MSSRP)
Poster Session, University of Texas Medical Branch, Galveston, TX (June
22). |
|
| - Garcia,
T.I., Oberhauser, A.F. and Braun, W. Examining Mechanically
Important Residue Combinations in Titin I-band Domains. 11th Annual
Sealy Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 19-20). |
||
| - Misra,
M., Chen, D.,
Menche, G., Power, T.D., Peterson, J.W. Schein, C.H. Designing
General Inhibitors of Adenylate Cyclase Toxins. 11th Annual Sealy
Center for Structural Biology and Molecular Biophysics Symposium,
University of Texas Medical Branch, Galveston, TX (May 19-20). |
||
| - Power, T.D., Negi, S.S., Ivanciuc, O.
and Braun, W. Physical-chemical Properties of Conformational
Epitopes. 11th Annual Sealy Center for Structural
Biology and Molecular
Biophysics Symposium, University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
| - Negi, S.S., Kolokoltsov,
A.A., Schein, C.H., Davey, R.A. and Braun, W. Predicting
Interacting Residues on the Protein Surface and Its Application to VEEV
Envelope Proteins. 11th Annual Sealy Center for Structural Biology and
Molecular
Biophysics Symposium, University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
| - Oezguen, N., Espinoza,
R.C.D., Cattaneo, R.B. and Braun, W. 3D Model of the Complex of
Measles Virus Haemagglutinin and its Human Receptor SLAM. 11th Annual
Sealy Center for Structural Biology and Molecular
Biophysics Symposium, University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
| - Ivanciuc, O.,
Midoro-Horiuti, T., Xie, L., Schein, C.H., Goldblum, R. and Braun,
W. Design of IgE Binding Peptides for the Allergen Jun a 1 using
the Property Distance Index PD. 11th Annual Sealy Center for Structural
Biology and Molecular
Biophysics Symposium, University of Texas Medical Branch, Galveston, TX
(May 19-20). |
||
| - Power, T.D., Negi, S.S., Ivanciuc, O.
and Braun, W. Physical-chemical Properties of Conformational
Epitopes. Bugs, Drugs and Vaccines: Securing Our Future, Cosponsored by
the Academy of Medicine, Engineering and Science of Texas and the
University of Texas System Office of Health Affairs, Moody Gardens
Hotel, Galveston, TX (April 5-6). |
||
| - Ivanciuc, O. and Braun,
W. Computational Vaccinology with Peptide Physico-chemical
Properties and Quantitative Structure-Activity Relationships. Bugs,
Drugs and Vaccines: Securing Our Future, Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and the University of Texas
System Office of Health Affairs, Moody Gardens Hotel, Galveston, TX
(April 5-6). |
||
| - Ivanciuc, O.,
Midoro-Horiuti, T., Xie, L., Schein, C.H., Goldblum, R. and Braun,
W. Computer-Aided Design of IgE Binding Peptides Using the
Property Distance Index PD. Bugs,
Drugs and Vaccines: Securing Our Future, Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and the University of Texas
System Office of Health Affairs, Moody Gardens Hotel, Galveston, TX
(April 5-6). |
||
| - Negi, S.S., Kolokoltsov,
A.A., Schein, C.H., Davey, R.A. and Braun, W. Predicting
Interacting Residues on the Protein Surface and Its Application to VEEV
Envelope Proteins. Bugs,
Drugs and Vaccines: Securing Our Future, Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and the University of Texas
System Office of Health Affairs, Moody Gardens Hotel, Galveston, TX
(April 5-6). |
||
| - Misra, M., Chen, D.,
Menche, G., Power, T.D., Peterson, J.W. Schein, C.H. Designing
General Inhibitors of Adenylate Cyclase Toxins. Bugs,
Drugs and Vaccines: Securing Our Future, Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and the University of Texas
System Office of Health Affairs, Moody Gardens Hotel, Galveston, TX
(April 5-6). |
||
| - Espinoza, R.C.D.,
Oezguen, N., Cattaneo, R.B. and Braun, W. Determination of the
Potential Receptor Binding Site of the Measles Virus Haemagglutinin. Bugs,
Drugs and Vaccines: Securing Our Future, Cosponsored by the Academy of
Medicine, Engineering and Science of Texas and the University of Texas
System Office of Health Affairs, Moody Gardens Hotel, Galveston, TX
(April 5-6). |
||
| - Xie, F., Jakubowski, J.,
Amare, A., Cummins, S.F., Nagle, G., Schein, C.H. and Sweedler,
J. Characterizing Pheromones in Aplysia Californica Using Liquid
Chromatography-mass Spectrometry. PITTCON, Orlando, FL (March 12-17). |
||
| - Chen, D., Menche, G., Power, T.D.,
Estrella-Jimenez, M.E., Gilbertson, S.R., Peterson, J.W. and Schein,
C.H. Comparison of Docking Methods for Designing Inhibitors
of Anthrax Edema Factor. 2006 McLaughlin Colloquium on Infection
and Immunity, University of Texas Medical
Branch, Galveston, TX (January 19). |
||
| - Power, T.D., Chen, D., Zhou, B., Braun, W.,
Peterson, J.W. and Schein, C.H. Evolution of Anthrax Protective
Antigen Channel. 2006 McLaughlin Colloquium on Infection
and Immunity, University of Texas Medical
Branch, Galveston, TX (January 19). |
||
| - Oezguen, N., Negi, S.,
Cattaneo, R.B., Braun, W. Comparison of the
Surface Properties of the Domain of Human SLAM (CD150) Recognized by
Measles Virus with that of its Mouse Homologue, and Implications for
Cell Entry. 2006 McLaughlin Colloquium on Infection
and Immunity, University of Texas Medical
Branch, Galveston, TX (January 19). |
||
2005 - Garcia, T.I., Oberhauser, A.F. and Braun, W. Predicting Mechanically Important Residue Combinations in Titin I-band Domains. Keck Center for Interdisciplinary Bioscience Training 2005 Annual Research Conference, Hilton Hotel, University of Houston, Houston, TX (October 6-7). |
||
| - Chen, D., Menche, G., Power, T.D.,
Estrella-Jimenez, M.E., Gilbertson, S.R., Peterson, J.W. and Schein,
C.H. Comparing Different Docking Methods for Designing Inhibitors
of Anthrax Edema Factor.
Keck Center for Interdisciplinary Bioscience Training 2005 Annual
Research Conference, Hilton Hotel, University of Houston, Houston, TX
(October 6-7). |
||
|
- Edwards, A., Ivanciuc, O., Oezguen,
N. and Schein, C.H. Correlation Between Allergy to Insect
Proteins and Asthma: Relating Cross Reactivity to the Sequence and
Structure of Allergens. High School Summer Research Program
Poster Session, University of Texas Medical
Branch, Galveston, TX (July 29). |
|
|
- Garcia, T.I., Braun, W. and Oberhauser, A.F. Experimental and Computational Investigations of a Beta--Sandwich Unfolding Pathway. Sealy Center for Structural Biology 10th Annual Structural Biology Symposium, University of Texas Medical Branch, Galveston, TX (May 20-21). | |
| - Avery, M.H., Oezguen, N., Schein, C.H.,
Zhou, B. and Braun, W.
Prediction of 3D Structures of Proteins by Template Combination:
Application to the Walnut Allergen Jug r 2. Sealy Center for Structural
Biology 10th Annual Structural Biology Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
||
| - Ravindran, A., Ivanciuc, O. and Braun,
W. Bioinformatics Study
for the Tomato Protein NP24 from the Pathogenesis-Related 5 Family.
Sealy Center for Structural Biology 10th Annual Structural Biology
Symposium, University of Texas Medical Branch, Galveston, TX (May
20-21). |
||
| - Roychowdhury, A., Ivanciuc, O. and
Braun, W. Computational
Investigation of Allergenic Determinants for the Buckwheat Allergen Fag
e 1. Sealy Center for Structural Biology 10th Annual Structural Biology
Symposium, University of Texas Medical Branch, Galveston, TX (May
20-21). |
||
| - Ivanciuc, O., Midoro-Horiuti, T.,
Schein, C.H., Brooks, E., Goldblum,
R. and Braun, W. Protein Allergenicity Prediction with the
Property Distance Index PD. Sealy Center for Structural Biology 10th
Annual Structural Biology Symposium, University of Texas Medical
Branch, Galveston, TX (May 20-21). |
||
| - Power, T.D., Chen, D., Menche, G.,
Monk, K.A., Estrella-Jimenez,
M.E., Bush, K.L., Wenglikowski, A., Gilbertson, S.R., Braun, W.,
Peterson, J.W. and Schein, C.H. Correlating Docking Results with
IC50 Data for Inhibitors of Anthrax Edema Factor. Sealy
Center for Structural Biology 10th Annual Structural Biology Symposium,
University of Texas Medical Branch, Galveston, TX (May 20-21). |
||
| - Zhou, B. and Braun, W. TESEP: A
Novel Approach for Template
Selection. Sealy Center for Structural Biology 10th Annual Structural
Biology Symposium, University of Texas Medical Branch, Galveston, TX
(May 20-21). |
||
| - Oezguen, N., Zhou, B., Avery, M., Negi,
S.S., Ivanciuc, O.I., Garcia,
T.I., Schein, C.H., Labesse, G. and Braun, W. Large Scale
Homology Modeling of Allergenic Proteins. Sealy Center for Structural
Biology 10th Annual Structural Biology Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
||
| - Oezguen, N., Hindupur,
A. and Braun, W. Sequence Analysis of P450 Families CYP1,
CYP2 and CYP3. Sealy Center for Structural Biology 10th Annual
Structural Biology Symposium, University of Texas Medical Branch,
Galveston, TX (May 20-21). |
||
| |
- Negi, S.S., Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun,
W. Predicting interacting residues on the protein surface and its
application to VEEV Envelope Proteins. Sealy Center for Structural
Biology 10th Annual Structural Biology Symposium, University of Texas
Medical Branch, Galveston, TX (May 20-21). |
|
| - Schein, C.H., Zhou, B.,
Power, T.D., Negi, S.S., Peterson, J.W. and Braun, W.
Stereophysicochemical Variability Plots provide a rapid way to analyze
epitopes and interacting sites of proteins from pathogens. 2005 Texas
BioDefense Summit IV: Texas Leadership in BioDefense, Preparedness and
Product Development, T Bar M Ranch, New Braunfels, TX
(April 28-29). |
||
| - Schein, C.H., Oezguen, N., Volk, D.E.,
Garimella, R., Paul, A.V. and
Braun, W. NMR structure of poliovirus VPg in a stabilizing
solvent. The 46th Experimental Nuclear Magnetic Resonance Conference
(ENC), Rhode Island Convention Center, Providence, RI (April 10-15). |
||
|
- Chen, D., Power, T.D., Monk, K.A.,
Bush, K.L., Wenglikowski, A., Gilbertson, S.R., Braun, W., Peterson,
J.W.
and Schein, C.H. Correlating Docking Results with IC50
Data for
Inhibitors of Anthrax Edema Factor. Sealy Center for Molecular
Science & Sealy Center for Cancer Cell Biology: 13th Annual Science
Forum, University of Texas Medical Branch, Galveston, TX (April 8). |
|
| - Ivanciuc, O., Midoro-Horiuti, T.,
Schein, C.H., Brooks, E., Goldblum, R. and Braun, W.
Cross-Reactivity Investigation with the Property Distance Index PD.
Sealy Center for Molecular Science & Sealy Center for Cancer Cell
Biology: 13th Annual Science Forum, University of Texas Medical Branch,
Galveston, TX (April 8). |
||
| - Oezguen, N., Negi, S.S., Tüzün, E.,
Christadoss, P. and Braun, W. Structural Analysis of the
α9-Subunit of the Neuronal Acetylcholine Receptor. Sealy Center for
Molecular Science & Sealy Center for Cancer Cell Biology: 13th
Annual Science Forum, University of Texas Medical Branch, Galveston, TX
(April 8). |
||
2004 - Ivanciuc, O., Midoro-Horiuti, T., Schein, C.H., Brooks, E., Goldblum, R. and Braun, W. Computational Tools for Allergenicity Prediction. McLaughlin Symposium: The Changing Landscape in Vaccine Development "Translating Vaccines for Emerging Diseases and Biodefense to the Marketplace", San Luis Hotel, Galveston, TX (November 12-14). |
||
| - Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W. Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV) Envelope Proteins. McLaughlin Symposium: The Changing
Landscape
in Vaccine Development "Translating Vaccines for Emerging Diseases and
Biodefense to the Marketplace", San Luis Hotel, Galveston, TX (November
12-14). |
||
| - Xie, L., Midoro-Horiuti,
T., Ivanciuc, O., Schein,
C.H., Braun, W.
and Goldblum, R.M. Developing New Allergen Vaccine
Using Phylogenetic Approach. McLaughlin
Symposium: The Changing Landscape
in Vaccine Development "Translating Vaccines for Emerging Diseases and
Biodefense to the Marketplace", San Luis Hotel, Galveston, TX (November
12-14). |
||
| - Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W.
Variability and Functional Analysis of the Anthrax Edema and Lethal
Factor Toxins. 2004 Texas Branch Meeting of The American Society for
Microbiology, Crowne Plaza Hotel, Houston, TX (November 4-6). |
||
| - Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W. Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV) Envelope Proteins. 2004
Texas Branch Meeting of The American Society for Microbiology, Crowne
Plaza Hotel, Houston, TX (November 4-6). |
||
| - Ivanciuc, O. and Braun, W. In Silico Screening of MHC Peptide
Affinity with Quantitative Structure-Activity Relationships. XXI
Southwest Theoretical Chemistry Conference, Gaido’s Seaside Inn,
Galveston, TX (October 22-23). |
||
| - Garcia, T., Torres, M., Zhou, B.,
Schein, C.H., Ivanciuc, O. and Braun, W. Large Scale Data Mining
of Allergenic Proteins. Keck/HAMBP Annual Research Conference, NASA
Hilton, Clear Lake, TX (October 8). |
||
| - Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W. Variability and Functional Analysis of the
Anthrax Edema and Lethal Factor Toxins. Keck/HAMBP Annual Research
Conference, NASA Hilton, Clear Lake, TX (October 8). |
||
| - Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel Software Tool for Efficient
Data Mining and Functional Annotation of Genomic Sequence Databases. Keck/HAMBP
Annual Research Conference, NASA Hilton, Clear Lake, TX (October 8). |
||
| - Oezguen, N., Power, T.D., Schein, C.H.,
Zhou, B., Mathura, V., Izumi, T. and Braun, W. Sequence
decomposition of metal sites and MD simulations suggest a novel "moving
ion" mechanism for the DNA repair endonuclease APE1. Keck/HAMBP
Annual Research Conference, NASA Hilton, Clear Lake, TX (October 8). |
||
| - Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and Braun, W. Predicting Interacting Surfaces
in Venezuelan Equine Encephalitis Virus (VEEV) Envelope Proteins.
Keck/HAMBP Annual Research Conference, NASA Hilton, Clear Lake, TX
(October 8). |
||
| - Ivanciuc, O., Midoro-Horiuti,
T., Schein, C.H., Brooks, E., Goldblum, R. and Braun, W. SDAP sequence similarity
search for food allergenicity prediction. Keck/HAMBP Annual Research
Conference, NASA Hilton, Clear Lake, TX (October 8). |
||
| - Oezguen, N., Power, T.D., Schein, C.H.,
Zhou, B., Mathura, V., Izumi, T. and Braun, W. Sequence
decomposition of metal sites and MD simulations suggest a novel "moving
ion" mechanism for the DNA repair endonuclease APE1. 60th ACS
Southwest Regional Meeting, Fort Worth, TX (September 29-October 2). |
||
|
- Power, T.D., Schein, C.H., Braun, W.
and Peterson, J.W.
Variability and Functional Analysis of the Anthrax Edema and Lethal
Factor Toxins. Annual McLaughlin Fellowship Colloquium on Infection and
Immunity, University of Texas Medical Branch, Galveston, TX (September
14). |
|
| - Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and
Braun, W. Predicting Interacting Surfaces in Venezuelan Equine
Encephalitis Virus (VEEV) Envelope Proteins. Annual McLaughlin Fellowship Colloquium
on Infection and
Immunity, University of Texas Medical Branch, Galveston, TX (September
14). |
||
| - Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel Software Tool for Efficient
Data Mining and Functional Annotation of Genomic Sequence Databases.
Sealy Center for Molecular Science-Science Forum 2004, University of
Texas Medical Branch, Galveston, TX (May 6-7). |
||
| - Negi, S.S, Kolokoltsov, A.A., Schein,
C.H., Davey, R.A. and
Braun, W. Predicting Interacting Surfaces in Venezuelan Equine
Encephalitis Virus (VEEV) Envelope Proteins. Sealy Center for Molecular
Science-Science Forum 2004, University of Texas Medical Branch,
Galveston, TX (May 6-7). |
||
| - Oezguen, N., Schein, C.H., Power,T.D.,
Tadahide Izumi, T. and Braun
W. Moving ion mechanism in APE1. Sealy Center for Molecular
Science-Science Forum 2004, University of Texas Medical Branch,
Galveston, TX (May 6-7). |
||
| - Power, T.D., Oezguen, N., and Braun,
W. Analysis of the
catalytic mechanism of human APE1 by QM/MM ONIOM calculations. Sealy
Center for Molecular Science-Science Forum 2004, University of Texas
Medical Branch, Galveston, TX (May 6-7). |
||
| - Ivanciuc, O. and Braun, W. A QSAR
Approach for Predicting MHC
Binding Peptides in an Antigen Sequence. Sealy Center for Molecular
Science-Science Forum 2004, University of Texas Medical Branch,
Galveston, TX (May 6-7). |
||
|
- Oezguen, N., Schein, C.H., Power, T.D.,
Izumi, T. and Werner Braun, W. Moving ion mechanism in APE1.
Sealy
Center for Structural Biology 9th Annual Structural Biology Symposium,
University of Texas Medical Branch, Galveston, TX
(April 30-May 1). |
|
| - Power, T.D., Oezguen, N. and Werner
Braun, W. Analysis of the catalytic mechanism of human APE1 by
QM/MM
ONIOM calculations. Sealy Center for Structural Biology 9th Annual
Structural
Biology Symposium, University of Texas Medical Branch, Galveston, TX
(April 30-May 1). |
||
| - Zhou, B., Schein, C.H., Mathura V.S.
and Braun W. PCPMer: A New Parallel Software Tool for Efficient
Data
Mining and Functional Annotation of Genomic Sequence Databases. Sealy
Center for Structural Biology 9th Annual Structural Biology Symposium,
University of Texas Medical Branch, Galveston, TX (April 30-May 1). |
||
| - Negi, S.S, Kolokoltsov, A.A., Zhou,
B., Schein, C.H., Davey, R.A. and Braun, W. Predicting
Interacting
Surfaces in Venezuelan Equine Encephalitis Virus (VEEV) Envelope
Proteins. Sealy Center for Structural Biology 9th Annual Structural
Biology
Symposium, University of Texas Medical Branch, Galveston, TX (April
30-May 1). |
||
| - Ivanciuc, O. and Braun, W.
Quantitative Structure-Activity Relationships for the Peptide Affinity
for MHC Class I HLA-A*0201. Sealy Center for Structural Biology 9th
Annual Structural Biology Symposium, University of Texas Medical
Branch,
Galveston, TX (April 30-May 1). |
||
2003 - Peterson, J.W., Gessell-Lee, D., Saini, S.S., Weisbaum, D., Lemoins, P., Morris, A.P., Fernandez, W.A., Schein, C.H. and Braun, W. Novel inhibitors of cholera toxin-induced intestinal fluid secretion. 10th Asian Conference on Diarrhoeal Diseases and Nutrition (ASCODD), Dhaka, Bangladesh (December 7-9). |
||
| - Schein, C.H., Ivanciuc, O. and Braun,
W. Determining common
physical chemical properties of IgE epitopes with a database of food
allergens. XI International Food Allergy Symposium, The American
College of Allergy, Asthma and Immunology, New Orleans, LA (November
7-12). |
||
| - Fernandez, W.A., Schein, C.H.,
Venkatarajan, M.S., Peterson, J.W. and
Braun, W. Sequence and structural decomposition of adenyl
cyclases and edema factor reveals similar functional regions.
Sealy Center for Molecular Sciences (SCMS) and Microbiology and
Immunology Science Forum, Galveston, TX (May 30). |
||
| - Ivanciuc, O.I., Schein, C.H.,
Midoro-Horiuti, T., Goldblum, R. and
Braun, W. Detecting potential IgE-binding sites on food proteins
using the SDAP web server. 8th Annual Sealy Center for Structural
Biology (SCSB) Symposium, Galveston, TX (May 2-4). |
||
| - Oezguen, N., Schein, C.H.,
Venkatarajan, M.S., Izumi, T. and Braun,
W. Dynamics of the Mg2+ metal ion in APE1. 8th Annual Sealy
Center for Structural Biology (SCSB) Symposium, Galveston, TX (May 2-4). |
||
|
- Fernandez, W.A., Schein, C.H.,
Venkatarajan, M.S., Peterson, J.W. and
Braun, W. MASIA sequence and structural decomposition of adenyl
cyclases and edema factor reveals similar functional regions. 8th
Annual Sealy Center for Structural Biology (SCSB) Symposium, Galveston,
TX (May 2-4). |
|
| - Schein, C.H., Wang, E., Ivanciuc, O.,
Ji, Z., Davey, R., Weaver, S.
and Braun, W. Determining functional areas of Venezuelan equine
encephalitis virus proteins. 2003 Annual Meeting of the Gulf Coast
Tropical Medicine Association, (GCTMA), Galveston, TX (April 24-26). |
||
| - Fernandez, W.A., Oezguen, N., Schein,
C.H., Braun, W. and Peterson,
J.W. Structural basis for the interaction of PGE2-imidazole
inhibitor with anthrax edema factor and mammalian adenylyl
cyclases. The 2003 Annual Meeting of the Gulf Coast Tropical
Medicine Association (GCTMA), Galveston, TX (April 24-26). |
||
| - Schein, C.H., Ivanciuc, O. and Braun,
W. Structural database
approach to determine common properties of allergenic proteins.
Monsanto Research Center, St. Louis, MO (March 24). |
||
| - Ivanciuc, O.I., Schein, C.H.,
Venkatarajan, M.S. and Braun, W.
Prediction of food allergenicity using the SDAP database and
computational tools. 47th Annual Biophysical Society Meeting, San
Antonio, TX (March 1-5). |
||
| - Xu, Y., Oezguen, N. and Braun, W.
A GUI based NOAH/DIAMOD
program for automated NOESY spectra assignment and protein structure
determination. 47th Annual Biophysical Society Meeting, San
Antonio, TX (March 1-5). |
||
| - Oezguen, N., Schein, C.H.,
Venkatarajan, M.S., Izumi, T. and Braun,
W.A. Dynamics of the Mg2+ metal ion and the metal binding sites
in APE1. 47th Annual Biophysical Society Meeting, San Antonio, TX
(March 1-5). |
||
2002 - Mathura, V., Ivanciuc, O., Oezguen, N., Schein, C., Xu, Y. and Braun, W. Evaluating sequence alignment of fold-recognition tools by quantitative scoring of physical-chemical property based motifs. 5th Meeting on the Critical Assessment of Structural Prediction (CASP5), Asilomar Conference Center, Lawrence Livermore National Laboratories, Pacific Grove, CA (December 1-5). |
||
| - Venkatarajan, M.S., Schein, C.H.,
Ivanciuc, O.I., Xu, Y. and Braun,
W. Automated generation of property based
motifs to search for functional neighbors and to improve sequence
alignments. 5th Meeting on the Critical Assessment of Structural
Predictions (CASP5), Asilomar Conference Center, Lawrence Livermore
National Laboratories, Pacific Grove, CA (December 1-5). |
||
| - Ivanciuc, O., Schein, C.H., Mathura,
V., Midoro-Horiuti, T.,
Goldblum,. R., Brooks, E. and Braun, W. Structural analysis of
IgE epitopes. American College of Allergy, Asthma and Immunology,
San Antonio, TX (November 15-20). |
||
| - Schein, C.H., Oezguen, N.,
Venkatarajan, M.S. and Braun, W.
Using MASIA to define metal box architecture in nucleases and
phosphatases. 58th Southwest Region American Chemical Society
(ACS) Meeting, Hilton Austin North and Towers, Austin, TX (November
3-6). |
||
| - Ivanciuc, O., Schein, C.H. and Braun,
W. SDAP: Database
and computational tools for allergenic proteins. Keck/GCC
Bioinformatics Consortium - 2002 Bioinformatics Symposium, Rice
University, Houston, TX (October 14-15). |
||
| - Oezguen, N., Schein, C.H., Izumi, T.
and Braun, W. Dynamics of
the metal binding sites in APE1. Keck/GCC Bioinformatics
Consortium - 2002 Bioinformatics Symposium, Rice University, Houston,
TX (October 14-15). |
||
| - Oezguen, N., Schein, C.H., Izumi, R.
and Braun, W. APE1:
mobility of metal ion and recognition sites at the protein/DNA
interface of wild type and mutant apurinic/apyrimidinic
endonucleases. 7th Annual Structural Biology Symposium,
Galveston, TX (May 17-19). |
||
| - Ivanciuc, O., Schein, C.H.,
Venkatarajan, M.S. and Braun, W.
Structural characterization of allergenic determinants with the web
server SDAP. 7th Annual Structural Biology Symposium, Galveston,
TX (May 17-19). |
||
| - Garimella, R., Xu, Y., Rajarathnam, K.,
Schein, C.H., Nagle, G.T.,
Painter, S.D. and Braun, W. The solution structure of a
water-borne pheromone from the mollusk, aplysia californica determined
with NMR. 7th Annual Structural Biology Symposium, Galveston, TX
(May 17-19). |
||
| - Midoro-Horiuti, T., Mathura, V.,
Schein, C.H., Braun, W., Chin,
C.C.Q., Yu, S., Watanabe, M., Lee, J.C., Brooks, E.G. and Goldblum,
R.M. Peptide mimetics for IgE epitopes of Jun A 1, the major
allergen of mountain cedar pollen. 7th Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
| - Mathura, V., Schein, C.H., Oezguen, N.
and Braun, W. Defining
physical-chemical properties based motifs specific for members of the
APE family of DNA repair proteins. 7th Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
| - Soman, K.V., Venkatarajan, M.S. and
Braun, W. Polar and apolar
areas on membrane protein surfaces. 7th Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
| - Xu, Y., Oezguen, N. and Braun, W.
A GUI design of NOAH/DIAMOD
programs for automated NOESY spectra assignment and protein structure
determination. 7th Annual Structural Biology
Symposium, Galveston, TX (May 17-19). |
||
| - Venkatarajan, M.S., Schein, C.H.,
Oezguen, N. and Braun, W.
(2002) Sequence and structural analysis of APE 1 protein family
using physical-chemical properties based motifs. Recent Advances in
Computational Molecular Biology, Washington DC (April 18-21). |
||
| -Oezguen, N., Garimella, R., Schein,
C.H., Xu, Y. and Braun, W.
Automatic NOESY assignment and structure determination of the protein
structures using NOAH/DIAMOD. 43rd Experimental Nuclear Magnetic
Resonance Conference (ENC), Asilomar, CA (April 14-19). |
||
| - Soman, K.V., Venkatarajan, M.S. and
Braun, W. Distribution of
polar and apolar areas on membrane protein surfaces. 46th Annual
Biophysical Society Meeting, San Francisco, CA (February 23-27). |
||
| - Schein, C.H., Ozgun, N., Izumi, T.,
Venkatarajan, M.S. and Braun,
W. Structural and functional motifs of apurinic/apyrimidinic
endonuclease. 2002 Keystone Symposia, Frontiers of Structural
Biology, Session J2, Breckenridge, CO (January 5-11). |
||
2001 - Venkatarajan, M.S., Soman, K.V. and Braun, A. 3D model of antiapoptotic protein murine BCL-2. 45th Annual Biophysical Society Meeting, Boston, MA (February). |
||
| - Oezguen, N., Kosynkina, L., Xu, Y.,
Rajarathnam, K. and Braun,
W. Minimal NMR spectral data needed for automated fold
determination by NOAH/DIAMOD. 42nd Annual Experimental Nuclear
Magnetic Resonance (ENC) Conference, Orlando, FL (March). |
||
| - Garimella, R., Schein, C.H., Xu, Y.,
Nagle, G.T., Painter, S.D. and
Braun, W. NMR structure determination of attractin, a pheromone
protein from the mollusk Aplysia Californica. 42nd Annual
Experimental Nuclear Magnetic Resonance (ENC) Conference, Orlando, FL
(March). |
||
| - Schein, C.H., Oezguen, N. and Braun,
W. Relating structure and
function of endonucleases that repair abasic sites in DNA. Life
Sciences Forum, Sealy Center for Molecular Science, Galveston, TX
(March 28). |
||
| - Venkatarajan, M.S., Hasan, R.J., Urvil,
P., Pawelczyk, E., Goluszko,
P., Selvarangan, R., Nowicki, S., Nowicki, B. and Braun, W.
Structure-function analysis of decay accelerating factor using modeling
and mutational mapping techniques. 6th Annual Structural Biology
Symposium, Galveston, TX (May). |
||
| - Soman, K.V., Venkatarajan, M.S. and
Braun, W. Distribution of
polar and apolar regions on membrane protein surfaces. 6th Annual
Structural Biology Symposium, Galveston, TX (May). |
||
|
- Oezguen, N., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
structure determination from 3D heteronuclear edited NMR spectra using
NOAH/DIAMOD. 6th Annual Structural Biology Symposium, Galveston,
TX (May). |
|
| - Schein, C.H., Oezguen, N.,
Venkatarajan, M.S., Izumi, T. and Braun,
W. Defining the mode of action of APE1 using MASIA motif
searching, MD-simulations and site directed mutagenesis. 6th
Annual Structural Biology Symposium, Galveston, TX (May). |
||
| - Garimella, R., Schein, C.H., Xu, Y.,
Rajarathnam. K., Nagle, G.T.,
Painter, S.D. and Braun, W. NMR-solution structure of attractin,
a water-borne pheromone from the mollusk Aplysia Californica. 6th
Annual Structural Biology Symposium, Galveston, TX (May). |
||
| - Midoro-Horiuti, T., Takako, F., Brooks,
E.G., Goldblum, R., Soman,
K., Mathura, V., Garimella, R., Braun, W. and Schein, C.H.
Structural studies of cedar pollen allergens. 6th Annual
Structural Biology Symposium, Galveston, TX (May). |
||
| - Schein, C.H., Ozgun, N., Izumi, T. and
Braun, W. Defining
molegos with MASIA: a modular approach to nuclease
function. 122nd American Chemical Society National Meeting,
Chicago, IL (August). |
||
2000 - Soman, K. and Braun, W. 3-D structures of proteins from experimental and theoretical constraints. 44th Annual Biophysical Society Meeting, New Orleans, LA (January). |
||
| - Soman, K. and Braun, W. 3-D
structures of proteins from
constraints: a new approach. 8th Annual Protein Folders
Meeting, Camp Allen, TX (March). |
||
| - Kosynkina, L., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
assignment and 3D structure determination of the myeloid progenitor
inhibitory factor-1. 41st Experimental Nuclear Magnetic Resonance
Conference (ENC), Pacific Grove, CA (April). |
||
| - Venkatarajan, M.S. and Braun, W.
A new vector representation of
amino acids based on large number of physico-chemical properties.
5th Annual Structural Biology Symposium, UTMB, Galveston, TX (May). |
||
| - Soman, K. and Braun, W.
Calculation of protein structures from
constraints. 5th Annual Structural Biology Symposium, UTMB,
Galveston, TX (May). |
||
| - Kosynkina, L., Xu, Y., Rajarathnam, K.
and Braun, W. Automated
assignment and 3D structure determination of the myeloid progenitor
inhibitory factor-1 (MPIF-1). 5th Annual Structural Biology
Symposium, UTMB, Galveston, TX (May). |
||
| - Venkatarajan, M.S. and Braun, W.
Quantitative descriptors for
amino acids based on physico-chemical properties using vector
representation. Research Retreat for the W.M. Keck Center for
Computational Biology, Rice University and Baylor College of Medicine,
Houston, TX (October). |
||
| - Schein, C.H., Nagle, G.T., Page, J.S.,
Sweedler, J.V., Xu, Y.,
Garimella, R., Painter, S.D. and Braun, W. Biophysical
characterization of aplysia attractin, a marine pheromone
protein. Research Retreat for the W.M. Keck Center for
Computational Biology, Rice University and Baylor College of Medicine,
Houston, TX (October). |
||
| - Soman, K. and Braun, W.
Calculating correct protein structures
without x-ray data and without NOE’s. Research Retreat for the
W.M. Keck Center for Computational Biology, Rice University and Baylor
College of Medicine, Houston, TX (October). |
||
| - Schein, C.H., Nagle, G.T., Page, J.S.,
Sweedler, J.V., Xu, Y.,
Garimella, R., Painter, S.D. and Braun, W. Biophysical
characterization of aplysia attractin, a marine pheromone
protein. Cambridge Healthtech Institute’s 2nd Annual Protein
Structure: Models, Folds, and Function Analyses Applications for
Target Validation, Tysons Corner, McLean, VA (October). |
||
| - Mathura, V.S., Soman, K.V., Schein,
C.H., Xu, Y. and Braun, W.
4th Meeting on the Critical Assessment of Techniques for Protein
Structure Prediction (CASP). Asilomar Conference Center, Pacific
Grove, CA (December). |
This page was last updated 15 January 2013 by David Power.
