References:

• Abe, H., Braun, W., Noguti, T. & Go, N. (1984). Rapid calculation of first and second derivatives of conformational energy with respect to dihedral angles for proteins. General recurrent equations. Computers & Chemistry 8, 239-247.

• Braun, W. (1987). Local deformation studies of chain molecules. Differential conditions for changes of dihedral angles. Biopolymers 26, 1691-1704.

• Schaumann, T. (1988). Strukturverfeinerung von Polypeptiden und Proteinen mit Newton-Raphson-Energieminimierung. Dissertation 8489, ETH Zürich, Zürich.

• Schaumann, T., Braun, W. & Wüthrich, K. (1990). The program FANTOM for energy refinement of polypeptides and proteins using a Newton-Raphson minimizer in torsion angle space. Biopolymers 29, 679 - 694.

• von Freyberg, B. & Braun, W. (1991). Efficient search for all low energy conformations of polypeptides by Monte Carlo methods. J. Comp. Chem. 12, 1065 - 1076.

• von Freyberg, B. & Braun, W. (1993). Minimization of empirical energy functions in proteins including hydrophobic surface area effects. J. Comp. Chem. 14, 510-521.

• von Freyberg, B., Richmond, T. & Braun, W. (1993). Surface area effects on energy refinement of proteins. A comparative study on atomic solvation parameters. J. Mol. Biol. 233, 275-292.

• von Freyberg, B. (1993). Studium der Mobilität von Polypeptid- und Proteinstrukturen mittels Monte Carlo-Verfahren und unter Berücksichtigung von Solvatationseffekten. Dissertation 10031, ETH Zürich, Zürich.

• Spitzfaden, C., Braun, W., Wider, G., Widmer, H., & Wüthrich, K. (1994). Determination of the NMR solution structure of the cyclophilin A-cyclosporin A complex. J. Biomol. NMR 4, 463-482.

• Mumenthaler, Ch. & Braun, W. (1995). Folding of globular proteins by energy minimization and Monte Carlo simulations with hydrophobic surface area potentials. J. Mol. Modeling 1, 1-10.

• Mumenthaler, Ch. (1996) Self-correcting distance geometry for the automatic assignment of NMR NOESY spectra and the prediction of protein tertiary structures. Dissertation 11995, ETH Zürich, Zürich.

• Braun, W. (1996) . In "Computer Simulation of Biomolecular Systems" , Vol.3. Chapter "Incorporation of Solvation Energy Contributions for energy refinement and folding of proteins". (W. van Gunsteren, T. Wilkinson and P. Weiner, Eds) ESCOM, Leiden.

• Mumenthaler, Ch., Schneider, U., Buchholz, Ch. J., Koller, D., Braun, W. and Cattaneo, R. (1997). A 3D model for the measles virus receptor CD46 based on homology modeling, Monte Carlo simulations and hemagglutinin binding studies. Protein Sci. 6, 588-597.

• Fraczkiewicz, R. and Braun, W. (1998) Exact and Efficient Analytical Calculation of the Accessible Surface Areas and Their Gradients for Macromolecules. J. Comp. Chem. 19, 319-333. Poster is available on-line.