Chen, D., Misra, M., Sower, L., Peterson, J.W., Kellogg, G.E. and Schein, C.H.  Novel inhibitors of Anthrax edema factor.
Bioorg. Med. Chem., (in press), 2008.
Abstract    Full Paper (Abstract link available when PubMed posts this article)

Oezguen, N., Zhou, B., Negi, S.S., Ivanciuc, O., Schein, C.H., Labesse, G. and Braun, W.  Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes.
Mol. Immunol., (in press), 2008.
Abstract    Full Paper (links available when PubMed and the journal post this article)

Cummins, S.F., Xie, F., de Vries, M.R., Annangudi, S.P., Misra, M., Degnan, B.M., Sweedler, J.V., Nagle, G.T., Schein, C.H.  Aplysia temptin: the "glue" in the water-borne attractin pheromone complex.
Febs J., 274(20), 5425-5437, 2007.
Abstract    Full Paper

Negi, S., Schein, C.H., Oezguen, N., Power, T.D. and Braun, W.  InterProSurf: a web server for predicting interacting sites on protein surfaces.
Bioinformatics,  23(24), 3397-3399, 2007.
Abstract    Full Paper

Misra, M. and Schein, C.H  Flavitrack: An annotated database of flavivirus sequences.
Bioinformatics, 23(19), 2645-2647, 2007.
Abstract    Full Paper

Sha, J., Wang, S.F., Suarez, G., Sierra, J.C., Fadl, A.A., Erova, T.E., Foltz, S.M., Khajanchi, B.K., Silver, A., Graf, J., Schein, C.H., Chopra, A.K.  Further characterization of a type III secretion system (T3SS) and of a new effector protein from a clinical isolate of Aeromonas hydrophila-Part I.
Microb. Pathog., 43(4), 127-146, 2007.
Abstract     Full Paper

Oezguen, N., Schein, C.H., Peddi, S.R., Power, T.D., Izumi, T., and Braun, W.  A "moving metal mechanism" for substrate cleavage by the DNA Repair endonuclease APE-1.
Proteins, 68(1), 313-323, 2007.
Abstract     Full Paper

Chen, D., Menche, G, Power, T.D., Peterson, J.W. and Schein, C.H.  Accounting for ligand-bound metal ions in docking small molecules on adenylyl cyclase toxins.
Proteins, 67(3), 593-605, 2007.
Abstract     Full Paper

Schein, C.H. Ivanciuc O. and Braun, W.  Bioinformatics approaches to classifying allergens and predicting cross-reactivity.
Immunol. Allergy Clin. North Am., 27(1), 1-27, 2007.
Abstract     Full Paper

Cummins, S.F., Xie, F., Misra, M., Amare, A., Jakubowski, J.A., de Vries, M.R., Sweedler, J.V., Nagle, G.T. and Schein, C.H.  Recombinant production and structural studies of the aplysia water-borne protein phermone enticin indicates it has a novel disulfide stabilized fold.
Peptides, 28(1):94-102, 2007.
Abstract     Full Paper

Schein, C.H., Ivanciuc, O. and Braun, W.  Structural Database of Allergenic Proteins (SDAP).
Food Allergy, Edited by S.J. Maleki, © 2006 ASM Press, Washington D.C. 257-283.
Book Chapter

Negi, S.S., Kolokoltsov, A.A., Schein, C.H., Davey, R.A. and Braun, W.  Determining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis virus.
J. Mol. Model. (Online), 12(6):921-929, 2006.
Abstract      Full Paper

Schein, C.H., Oezguen, N., Volk, D.E., Garimella, R., Paul, A. and Braun, W. NMR structure of the viral peptide linked to the genome (VPg) of poliovirus.
Peptides,  27(7):1676-1684, 2006.
Abstract      Full Paper

Midoro-Horiuti, T., Schein, C.H., Mathura, V., Braun, W., Czerwinski, E.W., Togawa, A., Kondo, Y., Oka, T., Watanabe, M. and Goldblum, R.M. Structural basis for epitope sharing between group 1 allergens of cedar pollen.
Mol. Immunol.  43(6):509-518, 2006.
Abstract      Full Paper

Schein, C.H., Ivanciuc, O. and Braun, W. Common physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens.
J. Agric. Food Chem. 53(22):8752-8759, 2005.
Abstract      Full Paper

Schein, C.H., Zhou, B. and Braun, W. Stereophysicochemical variability plots highlight conserved antigenic areas in Flaviviruses.
Virol. J.  2(1):40, 2005.
Abstract      Full Paper

Cummins, S.F., Schein, C.H., Xu, Y., Braun, W. and Nagle, G.T. Molluscan attractins, a family of water-borne protein pheromones with interspecific attractiveness.
Peptides  26(1):121-129, 2005.
Abstract      Full Paper

Schein, C.H., Zhou, B., Oezguen, N., Mathura, V.S., and Braun, W. Molego-based definition of the architecture and specificity of metal binding sites.
Proteins  58(1):200-210, 2005.
Abstract      Full Paper

Painter, S.D., Cummins, S.F., Nichols, A.E., Akalal, D.B.G., Schein, C.H., Braun, W., Smith, J.S., Susswein, A.J., Levy, M., de Boer, P.A.C.M., ter Maat, A., Miller, M.W., Scanlan, C., Milberg, R.M., Sweedler, J.V. and  Nagle, G.T. Structural and functional analysis of Aplysa attractins, a family of water-borne protein phermones with interspecific attractiveness.
Proc. Natl. Acad. Sci. USA  101(18):6929-6933, 2004.
Abstract      Full Paper

Ivanciuc, O., Oezguen, N., Mathura, V.S., Schein, C.H., Xu, Y. and Braun, W.  Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins. 
Curr. Med. Chem.  11:583-593, 2004.
Abstract      Full Paper

Izumi, T., Schein, C.H., Oezguen, N., Feng, Y. and Braun, W.  Effects of backbone contacts 3' to the abasic site on the cleavage and the product binding by human apurinic/apyrimidinic endonuclease (APE1). 
Biochemistry   43(3):684-689, 2004.
Abstract      Full Paper

Midoro-Horiuti, T., Mathura, V., Schein, C.H., Braun, W., Yu, S., Watanabe, M., Lee, J.C., Brooks, E.G. and Goldblum, R.  Major linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to the pectate lyase catalytic site. 
Mol. Immunol.  40(8):555-562, 2003.
Abstract      Full Paper

Ivanciuc, O., Mathura, V., Midoro-Horiuti, T., Braun, W., Goldblum, R. and Schein, C.H.  Detecting potential IgE-reactive sites on food proteins using a sequence and structure database, SDAP-Food. 
J. Agr. Food Chem.  51(16):4830-4837, 2003.
Abstract      Full Paper

Garimella, R., Xu, Y., Schein, C.H., Rajarathnam, K., Painter, S.D., Nagle, G.T. and Braun, W.  NMR solution structure of attractin, a water-borne protein pheromone from the mollusk Aplysia californica. 
Biochemistry  42(33):9970-9979, 2003.
Abstract       Full Paper

Ivanciuc, O., Schein, C.H. and Braun, W.  SDAP:  database and computational tools for allergenic proteins. 
Nucleic Acids Res.  31(1):359-362, 2003.
Abstract       Full Paper

Mathura, M.S., Schein, C.H. and Braun, W.  Identifying property based sequence motifs in protein families and superfamilies:  application to DNase-1 related endonucleases. 
Bioinformatics  19(11):1381-1390, 2003.
Abstract       Full Paper

Schein, C.H., Ozgun, N., Izumi, T. and Braun, W.  Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases. 
BMC Bioinformatics  3(1):37, 2002.
Abstract       Full Paper

Ivanciuc, O.I., Schein, C.H. and Braun, W.  Data mining of sequences and 3D structures of allergenic proteins. 
Bioinformatics  18(10):1358-1364, 2002.
Abstract       Full Paper

Murtazina, D., Puchkaev, A.V., Schein, C.H., Oezguen, N., Braun, W., Nanavati, A. and Pikuleva, I.A.  Membrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1. 
J. Biol. Chem.  277(40):37582-37589, 2002.
Abstract       Full Paper

Schein, C.H., Nagle, G.T., Page, J., Sweedler, J.V., Xu, Y., Painter, S.D. and Braun, W.  Aplysia attractin:  biophysical characterization and modeling of a water-borne pheromone. 
Biophys. J.  81(1):463-472, 2001.
Abstract       Full Paper

Soman, K.V., Schein, C.H., Zhu, H. and Braun, W.  Homology modeling and simulations of nuclease structures. 
Methods Mol. Biol.  160:263-286, 2001.
Abstract       Full Paper Not Available Online

Zhu, H., Schein, C.H. and Braun, W.  MASIA:  recognition of common patterns and properties in multiple aligned protein sequences.  Bioinformatics  16(10):950-951, 2000.
Abstract       Full Paper

Soman, K.V., Midoro-Horiuti, T., Chu, J.Y., Goldblum, R.M., Brooks, E.G., Braun, W. and Schein, C.H.  Homology modeling and characterization of IgE binding epitopes of mountain cedar allergen Jun a 3. 
Biophys. J.  79(3):1601-1609, 2000.
Abstract       Full Paper

 
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