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Complete List of Schein Group Publications

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(74)  Chen, D., Misra, M., Sower, L., Peterson, J.W., Kellogg, G.E. and Schein, C.H.  (2008)
Novel inhibitors of Anthrax edema factor.
Bioorg. Med. Chem.,  (in press).

(73)  Oezguen, N., Zhou, B., Negi, S.S., Ivanciuc, O., Schein, C.H., Labesse, G. and Braun, W.  (2008)
Comprehensive 3D-modeling of allergenic proteins and amino acid composition of potential conformational IgE epitopes.
Mol. Immunol.,  (in press).

(72)  Cummins, S.F., Xie, F., de Vries, M.R., Annangudi, S.P., Misra, M., Degnan, B.M., Sweedler, J.V., Nagle, G.T., Schein, C.H.  (2007)
greenball.gifAplysia temptin: the "glue" in the water-borne attractin pheromone complex.
Febs J.,  274(20), 5425-5437.
(71)  Negi, S., Schein, C.H., Oezguen, N., Power, T.D. and Braun, W.  (2007)
greenball.gifInterProSurf: a web server for predicting interacting sites on protein surfaces.
Bioinformatics, 23(24), 3397-3399.
(70)  Misra, M. and Schein, C.H.  (2007)
greenball.gifFlavitrack: An annotated database of flavivirus sequences.
Bioinformatics, 23(19), 2645-2647.
(69)  Sha, J., Wang, S.F., Suarez, G., Sierra, J.C., Fadl, A.A., Erova, T.E., Foltz, S.M., Khajanchi, B.K., Silver, A., Graf, J., Schein, C.H., Chopra, A.K.  (2007)
greenball.gifFurther characterization of a type III secretion system (T3SS) and of a new effector protein from a clinical isolate of Aeromonas hydrophila-Part I.
Microb. Pathog., 43(4), 127-146.
(68)  Oezguen, N., Schein, C.H., Peddi, S.R., Power, T.D., Izumi, T. and Braun, W.  (2007)
greenball.gifA "moving metal mechanism" for substrate cleavage by the DNA repair endonuclease APE-1.
Proteins, 68(1), 313-323.
(67)  Chen, D., Menche, G, Power, T.D., Peterson, J.W. and Schein, C.H .  (2007)
greenball.gifAccounting for ligand-bound metal ions in docking small molecules on adenylyl cyclase toxins.
Proteins, 67(3), 593-605.
(66)  Schein, C.H. Ivanciuc O. and Braun, W.  (2007)
greenball.gifBioinformatics approaches to classifying allergens and predicting cross-reactivity.
Immunol. Allergy Clin. North Am., 27(1), 1-27.

(65)  Cummins, S.F., Xie, F., Misra, M., Amare, A., Jakubowski, J.A., de Vries, M.R., Sweedler, J.V., Nagle, G.T. and Schein, C.H.   (2007)
greenball.gifRecombinant production and structural studies of the aplysia water-borne protein phermone enticin indicates it has a novel disulfide stabilized fold.
Peptides, 28(1), 94-102.

(64)  Schein, C.H.,  Ivanciuc, O.and Braun, W.  (2006)
greenball.gifStructural Database of Allergenic Proteins (SDAP).
Food Allergy, Edited by S.J. Maleki, copyright 2006
ASM Press, Washington D.C. 257-283.


(63)  Negi, S.S., Kolokoltsov, A.A., Schein, C.H., Davey, R.A. and Braun, W.  (2006)
greenball.gifDetermining functionally important amino acid residues of the E1 protein of Venezuelan equine encephalitis visus.
J. Mol. Model., 12(6), 921-929.

(62)  Schein, C.H., Oezguen, N., Volk, D.E., Garimella, R., Paul, A. and Braun, W.  (2006)
greenball.gifNMR structure of the viral peptide linked to the genome (VPg) of poliovirus.
Peptides,  27(7), 1676-1684..
(61)  Schein, C.H., Volk, D.E., Oezguen, N. and Paul, A.  (2006)
greenball.gifNovel, structure-based mechanism for uridylylation of the genome-linked peptide (VPg) of picornaviruses.
Proteins63(4), 719-726.

(60)  Cummins S.F., Nichols A.E., Schein C.H. and Nagle G.T.  (2006)
greenball.gifNewly identified water-borne protein pheromones interact with attractin to stimulate mate attraction in Aplysia.
Peptides,  27(3), 597-606.

(59) Midoro-Horiuti, T., Schein, C.H., Mathura, V., Braun, W., Czerwinski, E.W., Togawa, A., Kondo, Y., Oka, T., Watanabe, M. and Goldblum, R.M. (2006)
greenball.gifStructural basis for epitope sharing between group 1 allergens of cedar pollen.
Mol. Immunol.,  43(6), 509-518.
(58) Schein, C.H., Ivanciuc, O. and Braun, W. (2005)
greenball.gifCommon physical-chemical properties correlate with similar structure of the IgE epitopes of peanut allergens.
J. Agric. Food Chem.,  53(22), 8752-8759.

(57) Schein, C.H., Zhou, B. and Braun, W.  (2005)

(56) Cummins, S.F., Schein, C.H., Xu, Y., Braun, W. and Nagle, G.T. (2005)
greenball.gifMolluscan attractins, a family of water-borne protein pheromones with interspecific attractiveness.
Peptides, 26, 121-129.

(55) Schein, C.H., Zhou, B., Oezguen, N., Mathura, V.S., and Braun, W. (2005)
greenball.gifMolego-based definition of the architecture and specificity of metal binding sites.
Proteins, 58, 200-210.

(54) Painter, S.D., Cummins, S.F., Nichols, A.E., Akalal, D.B.G., Schein, C.H., Braun, W., Smith, J.S., Susswein, A.J., Levy, M., de Boer, P.A.C.M., ter Maat, A., Miller, M.W., Scanlan, C., Milberg, R.M., Sweedler, J.V. and  Nagle, G.T. (2004)
greenball.gifStructural and functional analysis of Aplysa attractins, a family of water-borne protein phermones with interspecific attractiveness.
Proc. Natl. Acad. Sci. USA, 101, 6929-6933.

(53) Ivanciuc, O., Oezguen, N., Mathura, V.S., Schein, C.H., Xu, Y. and Braun, W. (2004)
greenball.gifUsing property based sequence motifs and 3D modeling to determine structure and functional regions of proteins.
Curr. Med. Chem., 11, 583-593.

(52) Schein, C.H.  (2004)
greenball.gifA cool way to make proteins.
Nat. Biotechnol.  22(7):826-827.

(51) Izumi, T., Schein, C.H., Oezguen, N., Feng, Y. and Braun, W. (2004)
greenball.gifEffects of backbone contacts 3' to the abasic site on the cleavage and the product binding by human apurinic/apyrimidinic endonuclease (APE1).
Biochemistry, 43, 684-689.

(50) Schein, C.H. (2004)
greenball.gifFrom interleukin families to glycans: relating cytokine structure to function.
Curr. Pharm. Des., 10(31):3853-3856.

(49) Hermann, P.M., Schein, C.H., Nagle, G.T. and Wildering, W.C.  (2004)
greenball.gifLymnaea EGF and gigantoxin I, novel invertebrate member of the epidermal growth factor family.
Curr. Pharm. Des.,  10(31):3885-3892.

(48) Akalal, D.B., Schein, C.H. and Nagle, G.T.  (2004)
greenball.gifMollusk-derived growth factor and the new subfamily of adenosine deaminase-related growth factors.
Curr. Pharm. Des.,  10(31):3893-3900.

(47) Midoro-Horiuti, T., Mathura, V., Schein, C.H., Braun, W., Yu, S., Watanabe, M., Lee, J.C., Brooks, E.G. and Goldblum, R. (2003)
greenball.gifMajor linear IgE epitopes of mountain cedar pollen allergen Jun a 1 map to the pectate lyase catalytic site.
Mol. Immunol., 40, 555-562.

(46) Ivanciuc, O., Mathura, V., Midoro-Horiuti, T., Braun, W., Goldblum, R. and Schein, C.H. (2003)
greenball.gifDetecting potential IgE-reactive sites on food proteins using a sequence and structure database, SDAP-Food.
J. Agr. Food Chem., 51, 4830-4837.

(45) Garimella, R., Xu, Y., Schein, C.H., Rajarathnam, K., Painter, S.D., Nagle, G.T. and Braun, W. (2003)
greenball.gifNMR solution structure of attractin, a water-borne protein pheromone from the mollusk Aplysia californica.
Biochemistry, 42, 9970-9979.

(44) Mathura, V.S., Schein, C.H. and Braun, W. (2003)
greenball.gifIdentifying property based sequence motifs in protein families and superfamilies:  application to DNase-1 related endonucleases.
Bioinformatics, 19, 1381-1390.

(43) Ivanciuc, O., Schein, C.H. and Braun, W. (2003)
greenball.gifSDAP:  database and computational tools for allergenic proteins.
Nucleic Acids Res., 31, 359-362.

(42) Schein, C.H., Ozgun, N., Izumi, T. and Braun, W. (2002)
greenball.gifTotal sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases.
BMC Bioinformatics, 3:37.

(41) Ivanciuc, O.I., Schein, C.H. and Braun, W. (2002)
greenball.gifData mining of sequences and 3D structures of allergenic proteins.
Bioinformatics,  18, 1358-1364.

(40) Murtazina, D., Puchkaev, A.V., Schein, C.H., Oezguen, N., Braun, W., Nanavati, A. and Pikuleva, I.A. (2002)
greenball.gifMembrane-protein interactions contribute to efficient 27-hydroxylation of cholesterol by mitochondrial cytochrome P450 27A1.
J. Biol. Chem., 277, 37582-37589.


(38) Soman, K.V., Schein, C.H., Zhu, H. and Braun, W. (2001)
greenball.gifHomology modeling and simulations of nuclease structures.
Methods Mol. Biol., 160, 263-286.

(37) Schein, C.H., Nagle, G.T., Page, J. Sweedler, J.V., Xu, Y., Painter, S.D. and Braun, W. (2001)
greenball.gifAplysia attractin: biophysical characterization and modeling of a water-borne pheromone.
Biophys. J., 81, 463-472.

(36) Schein, C.H.  (2001)
greenball.gifProducing soluble recombinant RNases and assays to measure their interaction with interferon-gamma in vitro.
Methods in Molecular Biology 160, editor C. H. Schein
Humana Press, Totowa, NJ, pp.113-137.

(35) Soman, K.V., Schein, C.H., Zhu, H. and Braun, W. (2001)
greenball.gifHomology modeling and simulations of nuclease structures.
In Nuclease Methods and Protocols, Schein, C.H. (ed) for series Methods in Molecular Biology
Vol. 160, 2001, Humana Press, Totowa, N.J., pp. 263-286.

(34) Midoro-Horiuti, T M. Goldblum, R M. Schein, C H. Soman, K V. Braun, W. Kurosky, A. Brooks, E G. (2000)
greenball.gifStructural Analysis of Jun a 3, a Potentially Inducible Allergen of Mountain Cedar Pollen.
J. Allergy Clin. Immun., 105 (1): Part 2, S327.

(33) Zhu, H., Schein, C., and W.Braun (2000).
greenball.gifMASIA: recognition of common patterns and properties in multiple aligned protein sequences.
Bioinformatics, 16, 950-951.

(32) Soman, K.V., Midoro-Horiuti, T., Ferreon, J.C., Goldblum, R.M., Brooks, E.G., Kurosky,
A., Braun, W. and Schein, C.H. (2000).
greenball.gifHomology modeling and characterization of Ig E binding epitopes of mountain cedar allergen Jun a 3.
Biophys. J., 79, 1601-1609.

 (31) Zhu, H., Schein, C.H. and Braun, W. (1999)
greenball.gifHomology modeling and molecular dynamics simulations of PBCV-1 glycosylase complexed with UV-damaged DNA .
J. Mol. Model, 5, 302-316.

(30) Xu, Y., Schein, Ch. and Braun, W. (1999)
greenball.gifCombined automated assignment of NOESY spectra and three-dimensional structure calculation of proteins.
Biological Magnetic Resonance Vol. 17, pp 37-79
(L.J. Berliner & N. Rama Krishna, eds) Kluwer Academic/Plenum Publishing Corporation, New York, NY.

(29) Midoro-Horiuti, T., Goldblum, R.M., Kurosky, A., Wood, T.G., Schein, C.H. and Brooks, E.G. (1999)
greenball.gifMolecular cloning of mountain cedar (Juniperus ashei) pollen major allergen, June a 1.
J. Allergy Clin. Immunol.,  104(3 Pt 1):613-617.

(28) Schein, C.H.  (1999)
greenball.gifProtein expression, soluble.
For The Encyclopedia of Bioprocess Technology: Fermentation, Biocatalysis and Bioseparation.
J. Wiley and Sons, New York, NY. pp 2156-2169.

(27) Schein, C.H.  (1999)
greenball.gifProtein aggregation, degradation.
For the Encyclopedia of Bioprocess Technology: Fermentation, Biocatalysis and Bioseparation.
J. Wiley and Sons, New York, NY. pp 2134-2155.


(25) Schein, C.H.  (1997)
greenball.gifFrom housekeeper to microsurgeon:  the diagnostic and therapeutic potential of ribonucleases.
Nature Biotechnol.,  15(10):529-536.

(24) Reinhardt, C.A. and Schein, C.H. (1995)
greenball.gifGlutamine synthetase activity as an indicator of toxicity in cultures of embryonic chick brain and retinal cells.
Toxicol. In Vitro,  9:369-374.


(22) Boix, E., Nogués, M.V., Schein, C.H., Benner, S.A. and Cuchillo, C.M. (1994)
greenball.gifReverse transphosphorylation by ribonuclease A needs an intact p2 binding site.  Point mutations at Lys-7 and Arg-10 alter the catalytic properties of the enzyme.
J. Biol. Chem.,  269, 2529-2534.

(21) Schein, C.H.  (1994)
greenball.gifControlling oligomerization of pharmaceutical proteins.
Pharm. Acta Helv.,  69(3):119-126.

(20) Schein, C.H.  (1993)
greenball.gifSolubility and secretability.
Cur. Opin. Biotechnol.,  4(4):456-461.

(19) Schein, C.H.  (1993)
greenball.gifMust we live with inclusion bodies?
Protein Eng., 6(Supp 6):26-29.

(18) Schein, C.H., Boix, E., Haugg, M., Holliger, K.P., Hemmi, S., Frank, G. and Schwalbe, H. (1992)
greenball.gifSecretion of mammalian ribonucleases from Escherichia coli using the signal sequence of murine spleen ribonuclease.
Biochem. J., 283(Pt 1):137-144.


(16) Schein, C.H.  (1991)
Physical methods and models for the study of protein aggregation.
In: Protein Refolding (G. Georgiou,  and E. de Bernardez-Clark, eds) A.C.S. Books
Washington, D.C., pp 21-34.

(15) Schein, C.H.  (1991)
greenball.gifOptimizing protein folding to the native state in bacteria.
Cur. Opin. Biotechnol.,  2(5):746-750.

(14) Schein, C.H., Haugg, M. and Benner, S.A.  (1990)
greenball.gifInterferon-g activates the cleavage of double stranded RNA by bovine seminal ribonuclease.
FEBS Lett.,  270(1-2):229-232.

(13) Schein, C.H. (1990)
greenball.gifSolubility as a function of protein structure and solvent components.
Bio/Technology,  8(4):308-317.

(12) Schein, C.H.  (1989)
greenball.gifProduction of soluble recombinant proteins in bacteria.
Bio/Technology, 1141-1149.

(11) Schein, C.H. and Noteborn, M.H.M.  (1988)
greenball.gifFormation of soluble recombinant proteins in Escherichia coli is favored by lower growth temperature.
Bio/Technology,  6:291-294.


(9) Palva, I., Lehtovaara, P., Kèèrièinen, L., Sibakov, M., Cantell, K., Schein, C.H., Kashiwagi, K. and Weissmann, C.  (1983)
greenball.gifSecretion of interferon by Bacillus subtilis.
Gene,  22:229-235.

(8) Weissmann, C., Nagata, S., Boll, W., Fountoulakis, M., Fujisawa, A., Fujisawa, J., Haynes, J., Henco, K., Mantei, N., Ragg, H., Schein, C., Schmid, J. Shaw, G., Streuli, M., Taira, H., Todokoro, K. and Weidle, U.  (1982)
Structure and expression of human alpha-interferon genes.
UCLA Symposium on Molecular and Cellular Biology XXV:295-326.

(7) Weissmann, C., Nagata, S., Boll, W., Fountoulakis, M., Fujisawa, A., Fujisawa, J., Haynes, J., Henco,K., Mantei, N., Ragg, H., Schein, C., Schmid, J., Shaw, G., Streuli, M., Taira, H., Todokoro, K. and Weidle, U.  (1982)
greenball.gifStructure and expression of human interferon-alpha genes.
Philoso. Trans. R. Soc. London (Biol.), 299:7-28.

(6) Weissmann, C., Weidle, U., Ragg, H., Haynes, J., Mantei, N., Shaw, G., Taira, H., Mishima, M., Boll, W., Schein, C. and Fountoulakis, M.  (1982)
Expression of interferon genes in a heterospecific environment.
In  Humoral Factors in Host Defense, Takeda Science Foundation on Bioscience.

(5) Weissmann, C., Nagata, S., Boll, W., Fountoulakis, M., Fujisawa, A., Fujisawa, J., Haynes, J., Henco, K., Mantei, N., Ragg, H., Schein, C., Schmid, J. Shaw, G., Streuli, M., Taira, H., Todokoro, K. and Weidle, U.  (1982)
Structure and function of human alpha-interferon genes.
International Symposium for the Princess Takamatsu Cancer Research Fund 12:1-22.

(4) Schellekens, H., deReus, A., Bolhuis, R., Fountoulakis, M., Schein, C., Ecsödi, J., Nagata, S. and Weissmann, C.  (1981)
greenball.gifComparative antiviral efficiency of leukocyte and bacterially produced human alpha-interferon in rhesus monkeys.
Nature,  292:775-776.





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