PUBLICATIONS:

• Venkatarajan, M.S., Braun W., 2001, "New quantitative descriptors for amino acids based on multidimensional scaling of a large number of physical-chemical properties", J Mol Modeling 7:445-453 [HTML] [PDF] [Abstract]
• Schein CH, Ozgun N, Izumi T, Braun W., 2002, "Total sequence decomposition distinguishes functional modules, "molegos" in apurinic/apyrimidinic endonucleases.", BMC Bioinformatics 3(1):37 [HTML] [PDF] [Abstract]
• Venkatarajan S. Mathura , Schein, C. H., Braun W., 2003, "Identifying physical chemical property based sequence motifs in protein families and superfamilies: Application to DNase I related endonuclease", Bioinformatics 19(11):1381-1390 [PDF] [Abstract] [Supplementary Materials]
  

In press:

• Izumi,T., Wiederhold, L.R., Roy, R., Jaiswal, A., Mitra, S., Hazra, T.K., 2003, "Mammalian DNA Base Excision Repair Proteins: their interaction and role in repair of oxidative DNA damage.", Toxicology (in press)
• Ivanciuc, O., Oezguen, N., Venkatarajan, M.S., Schein, C.H., Xu, Y., Braun, W., 2003, "Using property based sequence motifs and 3D modeling to determine structure and functional regions of proteins.", Current Medicinal Chemistry (in press)