MPACK is a homology modeling package that integrates several packages from our group: PCPmer to
identify conserved regions, EXDIS to
extract angle and distance constraints, DIAMOD to generate protein
models from geometric constraints,
and FANTOM to optimize the protein geometry with the ECEPP
force field.
SDAP
is a Web server that integrates a database of
allergenic proteins with various bioinformatics
and computational tools to perform structural studies related
to allergens and characterization of their
epitopes.
FANTOM (Energy refinement
and
Monte Carlo simulations of proteins).
GETAREA
(Web interface to solvent accessible surface area calculations).
MASIA (Pattern search
and analysis in multiple aligned sequences of proteins).
DIAMOD
(Self-correcting distance geometry calculations of protein and DNA
structures).
NOAH
(Structure-based automatic assignment of multidimensional NOESY
spectra).
PCPMer is a
software tool for automatic motif detections of a protein family and
identification of related family members in protein sequence database.
InterProSurf is
designed to predict the most likely sites on proteins to interact with
other proteins, such as toxin elements, cell receptors and other
proteins that make up virus capsids.
Computational NMR Software
Follow this link to the
Software page of the NMR Center.
